Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g0362 ATGGCAACAACAACAACAACAACAACACCCATTCTCCAATGCATCTCACATTCTCCCACAGAAACCCAAATCCACGAACCTTCTTCACCTTCCCTTCTTTCTCTCATACCCAAATGCACCTCTCTCAGAGAGCTCAAGCAAATCCAGGCCCACACCATCAAAACCCACAACAGCCCCACCCTCTTCACAAAGCTCATAAATTTCTGCACTTCCAACCCCACAACCGCTTCCATGGACCATGCCCACCGCATGTTCGACCAAATTACCCAACCAGACATTGTTCTCTTCAACACCATGGCACGTGGATACGCACGCTTCGACGACCCTCTCAAAGCAATTCTCCTCTGTTCCCAAGTCCTCTGCTCTGGCCTCCTCCCAGATGACTACACTTTCTCCTCTCTCCTCAAGGCCTGTGCAAGGCTCAAGGCACTCCAGGAAGGTAAACAGCTGCATTGCCTTGCTGCTAAACTCGGTGTCAGTCATAACATGTATGTCTCTCCAACTCTTATTAACATGTACACTGCCTGCAATGACATGAATGCTGCCAGGAGGGTCTTTGACAAGCTCAACGACCCGTGTGTCGTTGCGTATAACGCCATCATCACGAGCTGTGCTCGGAGCAGCCGCCCCAACGAGGCCTTGGCTCTGTTCAGGGAGCTGCAGGGGAGTGGCCTCAAGCCAACTGATGTCACCATGCTCGTTGCTCTCTCGTCGTGTGCCTTGCTTGGGGCGTTGGAATTGGGGAGGTGGATCCATGAGTATGTCAAGAAGAATAACTTTGATCAGTATGTTAAGGTCAACACTGCACTTATTGATATGTATGCTAAATGTGGGAGTTTGGATGATGCGGTTTCTGTGTTCAGGGGAATGCCTAGGAGAGACACGCAGGCGTGGTCCGCGATGATTGTTGCCTATGCAACGCATGGAAATGGATCCCAGGCCATGTCATTGTTGGAGGAAATGAAGAAGGCAAAAGTGCAGCCTGATGAGATAACCTTTTTAGACATAGAAGATGAAGAGAAAGAAAATGTTCTGAGATATCACAGTGAGAAATTGGCCATTACTTATGGTCTTCTTAATACTCCTCCTGGAACAACAATTCGTGTGGTTAAGAACCTTAGAGTCTGTGTGGATTGCCACAATGCTGCTAAGTTTATATCACTGATCTTTGGTAGGCAAATTATTCTGAGAGATGTTCAGCGGTTTCATCATTTCAAAGATGGGAATTGCTCCTGTGGGGATTACTGGTAG 1251 0.4804 MATTTTTTTPILQCISHSPTETQIHEPSSPSLLSLIPKCTSLRELKQIQAHTIKTHNSPTLFTKLINFCTSNPTTASMDHAHRMFDQITQPDIVLFNTMARGYARFDDPLKAILLCSQVLCSGLLPDDYTFSSLLKACARLKALQEGKQLHCLAAKLGVSHNMYVSPTLINMYTACNDMNAARRVFDKLNDPCVVAYNAIITSCARSSRPNEALALFRELQGSGLKPTDVTMLVALSSCALLGALELGRWIHEYVKKNNFDQYVKVNTALIDMYAKCGSLDDAVSVFRGMPRRDTQAWSAMIVAYATHGNGSQAMSLLEEMKKAKVQPDEITFLDIEDEEKENVLRYHSEKLAITYGLLNTPPGTTIRVVKNLRVCVDCHNAAKFISLIFGRQIILRDVQRFHHFKDGNCSCGDYW 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g0362 416 Gene3D Tetratricopeptide repeat domain 38 193 IPR011990 GO:0005515
Aed11g0362 416 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 193 227 IPR002885 -
Aed11g0362 416 Gene3D Tetratricopeptide repeat domain 195 351 IPR011990 GO:0005515
Aed11g0362 416 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 20 335 - -
Aed11g0362 416 Pfam PPR repeat 268 293 IPR002885 -
Aed11g0362 416 PANTHER BNAA02G26650D PROTEIN 335 402 - -
Aed11g0362 416 PANTHER BNAA02G26650D PROTEIN 20 335 - -
Aed11g0362 416 SUPERFAMILY TPR-like 153 325 IPR011990 GO:0005515
Aed11g0362 416 TIGRFAM PPR: pentatricopeptide repeat domain 297 330 IPR002885 -
Aed11g0362 416 TIGRFAM PPR: pentatricopeptide repeat domain 268 294 IPR002885 -
Aed11g0362 416 TIGRFAM PPR: pentatricopeptide repeat domain 195 228 IPR002885 -
Aed11g0362 416 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 335 402 - -
Aed11g0362 416 Pfam PPR repeat family 91 140 IPR002885 -
Aed11g0362 416 Pfam PPR repeat family 294 333 IPR002885 -
Aed11g0362 416 Pfam PPR repeat family 192 239 IPR002885 -
Aed11g0362 416 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 92 126 IPR002885 -
Aed11g0362 416 Pfam DYW family of nucleic acid deaminases 333 416 IPR032867 GO:0008270
Aed11g0362 416 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 294 328 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g0362 Aed-Chr11 3092486 3094294 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g0362 22 416 Glycoside Hydrolase AT3G49170 27.935 3.72e-43 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g0362 - - gmx:100817794 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0362 11 3092486 3094294 Aed6g1577 6 19831867 19833606 PCT
Aed7g1727 7 20666230 20668023 Aed11g0362 11 3092486 3094294 PCT