Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1577 ATGGCACTAGAACACGTGATTTCTGCCTTAAAATCTGTTTCACAGAAGGCCCATTTGCTCCAAATCCATGCTCACATTATACGCACAACCCTCATTGAATACCCCACAGTTTCTCTTCAGTTCTTGTCTCGCATAGCTCTCTCTAGTCCTTTGCAAGATTCCAGCTATTCCCACCGTTTCTTTGAGCAACTCAGCCACCCATTTGCTTCCCATTACAACACCATGATCAGGTCCTATTCCATGACTGATTCGCCCCAAAAGGGTCTCCTTTTATATCGAGACATGAGAAGACGAGGCATTGCTGCAGACCCTTTATCTTCTTCCTTTGCTGTTAAGTCTTGTATAAGGTTTTTGTATCTTCTCGGAGGAGTTCAGGTTCATTGCAACATCTTCAAAGACGGGCACCAATGGGATACTCTTTTGCTCACTGCTGTCATGGACTTGTATTCACAGTGCCAGAGAGGCGGTGATGCATGCAAGGTGTTTGATGAGATGCCTCAGAGGGACACTGTTGCTTGGAATGTGATGATCTCTTGCTGTGTTCGAAATAATAGGACTCGGGATGCTTTGAGTTTATTTGATGTTATGCAGAGTTCAAGGTATAAATGTGAGCCTGATGATGTTACTTGTTTGCTTCTTCTTCAGGCTTGTGCTCATTTGAATGCCTTGGAATTTGGTGAACGGATTCATGGTTATATGGTGGAGCGTGGTTATGGGGGTGCTCTCAATTTATCTAATGCTCTCGTATCTATGTATTCACGGTGTGGTTGTTTAGACAAGGCTTATGAAGTGTTTAAGGGAACGGGCAGTAAAAATGTGGTTTCATGGAGTGCAATGATCTCTGGTTTGGCAATGAATGGATATGGGAGAGACGCAATTGAAGCATTTGAGGAGATGCTGAGAATTGGCATTCCGCCCGACGATCAGACATTCACGGGAGTCCTTTCTGCTTGCAGTCATTCTGGAATGGTTGACAAGGGAATGTCATTTTTCGACCGAATGAGCAGAGAGTTTGGAGTATCTCCCAACGTTCATCACTATGGGTGCATGGTTGATCTCTTGGGCCGTGCTGGCTTGCTTGATAAGGCTTATCAGCTTATAATTTCGATGGTGGTGAAGCCAGACTCCACAATGTGGAGAACCTTGCTTGGTGCTTGCAGAATTCATGGCCATGTTACACTTGGTGAACGAGTAATTGAACATTTGATTGAGTTGAAAGCTCAAGAAGCTGGGGATTATGTTTTACTTTTGAATATTTATTCTTCAGCTGGACACTGGGAAAAGGTAGCAGAAGTGAGAAAATTGATGAAAAATAAATCAATCCAAACCACACCTGGTTGTAGCACAATTGAATTGAAAGGAGTGCTACACGAATTTGTTGTGGACGATGTTTCACATGCTAGAAACCGTGAGATTTATAAGACACTGGATGAGATTAATCATCAGCTGAGGATTGCTGGTTATGTTGTTGAACTTTCATCTGAGTTACATAAGATGGATGACAAAGAAAAAGGCTATGTGCTCTCTCATCACAGTGAAAAATTGGCTGTTGCTTTTGGGGTTCTTGCTACTCCACCTGGCACAACACTGAGAGTGGCTAGTAATCTCCGTGTATGCGTTGATTGCCACAATTTTCTGAAACTTTTTTCTGGAGTTTACAACCGTGATGTAGTTCTTAGGGACCATAATCGGTTTCACCACTTCAGGGGAGGGCGCTGCTCATGTAGTGACTATTGGTAA 1740 0.4322 MALEHVISALKSVSQKAHLLQIHAHIIRTTLIEYPTVSLQFLSRIALSSPLQDSSYSHRFFEQLSHPFASHYNTMIRSYSMTDSPQKGLLLYRDMRRRGIAADPLSSSFAVKSCIRFLYLLGGVQVHCNIFKDGHQWDTLLLTAVMDLYSQCQRGGDACKVFDEMPQRDTVAWNVMISCCVRNNRTRDALSLFDVMQSSRYKCEPDDVTCLLLLQACAHLNALEFGERIHGYMVERGYGGALNLSNALVSMYSRCGCLDKAYEVFKGTGSKNVVSWSAMISGLAMNGYGRDAIEAFEEMLRIGIPPDDQTFTGVLSACSHSGMVDKGMSFFDRMSREFGVSPNVHHYGCMVDLLGRAGLLDKAYQLIISMVVKPDSTMWRTLLGACRIHGHVTLGERVIEHLIELKAQEAGDYVLLLNIYSSAGHWEKVAEVRKLMKNKSIQTTPGCSTIELKGVLHEFVVDDVSHARNREIYKTLDEINHQLRIAGYVVELSSELHKMDDKEKGYVLSHHSEKLAVAFGVLATPPGTTLRVASNLRVCVDCHNFLKLFSGVYNRDVVLRDHNRFHHFRGGRCSCSDYW 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1577 579 PANTHER OS08G0434000 PROTEIN 7 571 - -
Aed6g1577 579 Pfam E motif 389 451 IPR046848 -
Aed6g1577 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Aed6g1577 579 Pfam PPR repeat 71 100 IPR002885 -
Aed6g1577 579 Pfam PPR repeat 246 266 IPR002885 -
Aed6g1577 579 Pfam PPR repeat 143 168 IPR002885 -
Aed6g1577 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 342 IPR002885 -
Aed6g1577 579 Pfam PPR repeat family 271 319 IPR002885 -
Aed6g1577 579 Pfam PPR repeat family 169 218 IPR002885 -
Aed6g1577 579 Pfam PPR repeat 339 370 IPR002885 -
Aed6g1577 579 TIGRFAM PPR: pentatricopeptide repeat domain 310 344 IPR002885 -
Aed6g1577 579 TIGRFAM PPR: pentatricopeptide repeat domain 72 103 IPR002885 -
Aed6g1577 579 TIGRFAM PPR: pentatricopeptide repeat domain 171 206 IPR002885 -
Aed6g1577 579 TIGRFAM PPR: pentatricopeptide repeat domain 274 307 IPR002885 -
Aed6g1577 579 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 7 571 - -
Aed6g1577 579 Gene3D Tetratricopeptide repeat domain 5 124 IPR011990 GO:0005515
Aed6g1577 579 Gene3D Tetratricopeptide repeat domain 125 238 IPR011990 GO:0005515
Aed6g1577 579 Pfam DYW family of nucleic acid deaminases 487 579 IPR032867 GO:0008270
Aed6g1577 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Aed6g1577 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Aed6g1577 579 Gene3D Tetratricopeptide repeat domain 246 471 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1577 Aed-Chr6 19831867 19833606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1577 1 579 Glycoside Hydrolase AT3G49170 33.447 9.36e-114 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1577 - - gmx:100788135 1097.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1577 6 19831867 19833606 Aed6g1577 6 19831867 19833606 ECH
Aed11g0362 11 3092486 3094294 Aed6g1577 6 19831867 19833606 PCT