Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1727 ATGGCCACAACCACAACCAGCAACAACCAAATCCACACACACCTTATCCAGTTGCTGAACCAACCCACTATGCCTCAGCTCAAGCAAATTCACGCTCAAACCCTTCGCACCGTTCACACCAACAACCACCCAAAAGTTCTCTCTCTCCACACCAAAATTCTCCAACGTTACTCCTCTCTAACCAATCTCACCTACGCCACTCGCGTCTTTCGCTACTTCCCCAACCCCAACTCCTTCATGTGGAACACTCTCATAAGAGCCTACGCGAGAACCACCAACACCAACCATAAACACAAAGCCATCCAACTCTACAAAGCAATGATAACAACAGCAGTCGAAGAAAAAACCGCAGTTCCCGATAGCCACACGTTCCCCTTCGTTCTAAAAGCTTGCGCTTACACGTTTTCTCTCTGTGAAGGAAAACAGGTCCATGCCCACGTTTTCAAACACGGGTTTGAGTCGGATACTCACATTTGCAACAGTTTGATTCATTTCTACGCGACGTGTGGTTTCCTAGACTTGGCAGAGAAGATATTTTGTAAGATGGATCAGAGAAGCGAGGTTTCGTGGAATATCATGATTGATTCTTATGCTAAAGGTGGAAACTTTGACTCTGCTTTGAGGATGTTTGGTGAGATGCAGAAGGTGCATAACCCTGATGGGTTTACAATGCAGAGTGTTATTAGTTCCTGTGCTGGTTTGGGTGCTTTGTCTTTGGGCTTGTGGGCACATGCTTATGTTTTGAAAAAACGTGACAAGAACATGGTTAATGATGTTTTCGTCAACACTTGTTTGGTGGACATGTATTGCAAATGTGGGGAGTTGGAAATTGCGAAGCAAGTCTTTGAAAGCATGGATTATAGAGATGTGAATTCATGGAATTCGATGATTTTGGGTTTTGCAATGCATGGTGAGGCTAAAGCTGCATTGGACTATTATGCCAGAATGGTGAAGGTGGAGAAAATTGAGCCTAATTCAATAACTTTCGTTGGTCTTTTGAGTGCATGTAACCATAGGGGAATGGTTGATGAGGGGATTGTGAATTTTGAAATGATGACCAAGGAGCACAATGTGGAACCAAGATTGGAGCATTATGGTTGTGTTGTTGATCTTTTCGCTAGAGCCGGTCGCATCGACGAGGCTCTAAACTTGGTCTCAGATATGCCAATCAAACCAGATGCTGTAATCTGGAGGAGTCTTTTGGATGCATGTTGCAAGCAACATGCAAGTGTTGAGCTGAGTGAGGAAATTGCAAAGCAAGTTTTTGAGTCAGAGGGGAGTGTGTGTAATAGTAGTGGTGTTTATGTGCTTTTGTCAAAAGTGTATGCTTCTGCTTGCATGTGGAATGATGTAGGGTTGCTCAGAAAACTAATGAGTGAAAAGGGTGTGGCAAAAGAGCCTGGCTGCAGTTCAATAGAAATAAATGGAGTGGTTCATGAGTTTTTTGCAGGGGACACTACTCATCCAAAGAGTGAAAAGATATACAACTTTGTGAATGAAATTGAGGAGAAACTAGAATCAATAGGGTATGTACCTGAGATTGATGAGGCTAGTGATGATGGAAAACAGAATACTCCAAGGTTGCATAGTGAGAGATTGGCCATAGCTTTGGGGATATTGAACTCGAAACCTGGTGTGACAATTAGAGTGTTTAAGAATCTTAGGGTGTGCAGTGATTGTCACAGGGTTACCAAATTGATCTCAAGGATTTATAATGTGGAGATAGTTGTGAGAGATCGTGCTCGGTTCCATCACTTTAAAGATGGAACATGTTCTTGTATGGATCATTGGTGA 1794 0.4298 MATTTTSNNQIHTHLIQLLNQPTMPQLKQIHAQTLRTVHTNNHPKVLSLHTKILQRYSSLTNLTYATRVFRYFPNPNSFMWNTLIRAYARTTNTNHKHKAIQLYKAMITTAVEEKTAVPDSHTFPFVLKACAYTFSLCEGKQVHAHVFKHGFESDTHICNSLIHFYATCGFLDLAEKIFCKMDQRSEVSWNIMIDSYAKGGNFDSALRMFGEMQKVHNPDGFTMQSVISSCAGLGALSLGLWAHAYVLKKRDKNMVNDVFVNTCLVDMYCKCGELEIAKQVFESMDYRDVNSWNSMILGFAMHGEAKAALDYYARMVKVEKIEPNSITFVGLLSACNHRGMVDEGIVNFEMMTKEHNVEPRLEHYGCVVDLFARAGRIDEALNLVSDMPIKPDAVIWRSLLDACCKQHASVELSEEIAKQVFESEGSVCNSSGVYVLLSKVYASACMWNDVGLLRKLMSEKGVAKEPGCSSIEINGVVHEFFAGDTTHPKSEKIYNFVNEIEEKLESIGYVPEIDEASDDGKQNTPRLHSERLAIALGILNSKPGVTIRVFKNLRVCSDCHRVTKLISRIYNVEIVVRDRARFHHFKDGTCSCMDHW 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1727 597 Pfam E motif 408 473 IPR046848 -
Aed7g1727 597 Pfam PPR repeat family 289 336 IPR002885 -
Aed7g1727 597 TIGRFAM PPR: pentatricopeptide repeat domain 292 325 IPR002885 -
Aed7g1727 597 TIGRFAM PPR: pentatricopeptide repeat domain 188 215 IPR002885 -
Aed7g1727 597 Pfam DYW family of nucleic acid deaminases 516 597 IPR032867 GO:0008270
Aed7g1727 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 155 185 IPR002885 -
Aed7g1727 597 Pfam PPR repeat 263 287 IPR002885 -
Aed7g1727 597 Pfam PPR repeat 364 388 IPR002885 -
Aed7g1727 597 Pfam PPR repeat 159 185 IPR002885 -
Aed7g1727 597 Pfam PPR repeat 188 215 IPR002885 -
Aed7g1727 597 Gene3D Tetratricopeptide repeat domain 347 425 IPR011990 GO:0005515
Aed7g1727 597 PANTHER OS01G0913400 PROTEIN-RELATED 20 529 - -
Aed7g1727 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 258 292 IPR002885 -
Aed7g1727 597 PANTHER BNAC04G18690D PROTEIN 20 529 - -
Aed7g1727 597 Gene3D Tetratricopeptide repeat domain 21 141 IPR011990 GO:0005515
Aed7g1727 597 Gene3D Tetratricopeptide repeat domain 142 237 IPR011990 GO:0005515
Aed7g1727 597 Gene3D Tetratricopeptide repeat domain 238 346 IPR011990 GO:0005515
Aed7g1727 597 SUPERFAMILY TPR-like 136 326 IPR011990 GO:0005515
Aed7g1727 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 216 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1727 Aed-Chr7 20666230 20668023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1727 28 597 Glycoside Hydrolase AT3G49170 34.370 4.24e-117 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1727 - - gmx:100791183 1001.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g1727 7 20666230 20668023 Aed11g0362 11 3092486 3094294 PCT