Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1353 ATGGCTCTGTTCTCTGGCTACCAACATTCTTCTGAAATGGCCTTCGTTTTCGTCCTTCTTCTTGTTCTTGAAGGAGTTTCAGGGGCTACATTTACGTTTGTGAACAAGTGTGATTACACAGTATGGCCAGGAGTATTGGGAAAGCCTGACGTGGAAACCACAGGATTCGAGCTCTCCAAGGGAAGTTCTCGAAGTTTCCAGGCTCCACCTGGTTGGTCCGGTAGATTCTGGGCAAGAACTAACTGCAAATTCGACGATTCCGGTCACGGAACATGCGCCACCGGCGACTGTGGATCCGGAGGTATCGCCTGCAATGGCGCAGGTGCTTCCCCTCCTGCGACGCTGGCGGAGTTCACGATCGGCCCGGCGGGCTCTAAAGACTTCTACGATGTCAGCCTCGTCGATGGCTATAATCTGCCGATGATGGTGGAAGCGAAGGGAGGGTCAGGATCATGCGCGACCACTGGATGTGCGGCGGATCTCATCAGGCGGTGCCCATCGGAATTGAAGGCAGATGGCGGCGACGCCTGTAGGAGTGCTTGTGACGCGTTTGGGAAACCGGAATATTGCTGCAACGGCGACTTCGGTTCGCCGTCAACTTGCAGGCCGTCGATGTATTCGGAGATTTTCAAATCGGTGTGTCCTAAAGCGTATAGCTACGCCTACGATGATTCGACGAGTACCTTTACTTGCGCTGGAGCTGACTATACTATAACATTTTGTCCTTCTTCTTCCCCAAGTCTGAAATCGGCATCGATAGGGGCTGACGCACAACAGTCAGTGGAACAAGCAGCCATGGCAACTTCTTCTTGGATTGCAAATTTGGCTACTGGCCATTCCACTTCAATTCACCCTTCAATCCCTCTTCTTCTTCTGCTTCTTATTCTCATTGTTTCCTTCATTTAA 906 0.5155 MALFSGYQHSSEMAFVFVLLLVLEGVSGATFTFVNKCDYTVWPGVLGKPDVETTGFELSKGSSRSFQAPPGWSGRFWARTNCKFDDSGHGTCATGDCGSGGIACNGAGASPPATLAEFTIGPAGSKDFYDVSLVDGYNLPMMVEAKGGSGSCATTGCAADLIRRCPSELKADGGDACRSACDAFGKPEYCCNGDFGSPSTCRPSMYSEIFKSVCPKAYSYAYDDSTSTFTCAGADYTITFCPSSSPSLKSASIGADAQQSVEQAAMATSSWIANLATGHSTSIHPSIPLLLLLLILIVSFI 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1353 301 ProSitePatterns Thaumatin family signature. 88 104 IPR017949 -
Acco12g1353 301 CDD TLP-PA 30 241 - -
Acco12g1353 301 PRINTS Pathogenesis-related protein signature 30 42 IPR001938 -
Acco12g1353 301 PRINTS Pathogenesis-related protein signature 54 63 IPR001938 -
Acco12g1353 301 PRINTS Pathogenesis-related protein signature 232 241 IPR001938 -
Acco12g1353 301 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Acco12g1353 301 PRINTS Pathogenesis-related protein signature 127 143 IPR001938 -
Acco12g1353 301 Pfam Thaumatin family 35 242 IPR001938 -
Acco12g1353 301 ProSiteProfiles Thaumatin family profile. 28 242 IPR001938 -
Acco12g1353 301 FunFam THAUMATIN-LIKE PROTEIN 1 29 242 - -
Acco12g1353 301 PANTHER OS03G0233200 PROTEIN 16 242 IPR001938 -
Acco12g1353 301 SUPERFAMILY Osmotin, thaumatin-like protein 29 243 IPR037176 -
Acco12g1353 301 SMART tha2 31 242 IPR001938 -
Acco12g1353 301 PIRSF PR5 3 284 IPR001938 -
Acco12g1353 301 Gene3D Thaumatin 29 242 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1353 Acco-ChrAcco12 19260113 19262302 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1353 13 283 Receptor kinase-like Gene Family AT5G38280 44.170 1.52e-78 249
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco12g1353 12 19260113 19262302 Acco12g1353 12 19260113 19262302 ECH
Acco12g1353 12 19260113 19262302 Acco11g2390 11 37200455 37201650 ECH
Acco01g2139 01 37299419 37302564 Acco12g1353 12 19260113 19262302 ECH