Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2139 ATGGGACGCCATCTTCGCTACCTCCTTATTCTCATCTTCCTTGCATTTTCTTTCCTTTCGGAGGTGCAATCGGCATCTTTCAAGATTGTGAATAAGTGTCGCCACACGATTTGGCCGGGTTTGCTCTCTGGCGCCACTTCTCCACAGCTTTCCACTACTGGATTCGCTCTTCAAAGTGGCATGTCCAAGACTATAACGATCCCGAAATCTTGGTCGGGGCGGATATGGGCTCGGACTCTTTGTGGTCAGGATACTGACGGAAAGTTCTCCTGCCTCACTGCAGACTGCGGCTCCGGTCAAGTACAGTGTGCCGGTGGAGCTAAGCCACCCGCCACGTTGGCTGAGTTCACTCTCAACGGCGCCGACGGGTTAGATTTCTACGACGTGAGCTTGGTCGACGGCTACAACCTGCCGATGCTGATCGTTGCAAAAGGAGGAAAGCGGGGTGGATGTAGCGCCACCGGATGCTTGGTGGACCTGAACGAAGCATGTCCGGCTGATCTAAGGGTGGCGCGTGGGAACGGGACCAGTACTGGTGGTGATCGCGTGGCTTGCAGAAGCGCGTGTGAGGCCTTTGGGGATCCACAGTATTGTTGCAGTGAGGCGTACGCTACGCCTGACACGTGTCATCCATCAGTATATTCGGAATTCTTCAAGCACGCTTGCCCCCGCGCGTATAGCTACGCTTATGATGACAAGACAAGCACGTACACGTGTGCTTCGGCTGACTACTTGATTATTTTCTGCCCCTTGCCCTACACCAGCCAGAAGTTGCTGGGAGCTCGAAAAGACGGGGCGCCTCTTCCCCTTGTAAACAAAACCATGATGTACTTGAAGCATTCAGGAGTTTCTTCATCAAAAGGTCTGAATCAAATGCAGATTATGGCTTACAGAGCCTCTCTTGCAGCAGCATCTTTCCTGTTTTGCTCTCTTTTTCACCCGTTATGA 948 0.5264 MGRHLRYLLILIFLAFSFLSEVQSASFKIVNKCRHTIWPGLLSGATSPQLSTTGFALQSGMSKTITIPKSWSGRIWARTLCGQDTDGKFSCLTADCGSGQVQCAGGAKPPATLAEFTLNGADGLDFYDVSLVDGYNLPMLIVAKGGKRGGCSATGCLVDLNEACPADLRVARGNGTSTGGDRVACRSACEAFGDPQYCCSEAYATPDTCHPSVYSEFFKHACPRAYSYAYDDKTSTYTCASADYLIIFCPLPYTSQKLLGARKDGAPLPLVNKTMMYLKHSGVSSSKGLNQMQIMAYRASLAAASFLFCSLFHPL 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2139 315 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Acco01g2139 315 FunFam THAUMATIN-LIKE PROTEIN 1 25 250 - -
Acco01g2139 315 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Acco01g2139 315 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Acco01g2139 315 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Acco01g2139 315 PRINTS Pathogenesis-related protein signature 87 116 IPR001938 -
Acco01g2139 315 PRINTS Pathogenesis-related protein signature 240 249 IPR001938 -
Acco01g2139 315 PANTHER OS03G0233200 PROTEIN 12 250 IPR001938 -
Acco01g2139 315 ProSiteProfiles Thaumatin family profile. 24 250 IPR001938 -
Acco01g2139 315 Pfam Thaumatin family 31 250 IPR001938 -
Acco01g2139 315 SUPERFAMILY Osmotin, thaumatin-like protein 26 250 IPR037176 -
Acco01g2139 315 Gene3D Thaumatin 25 250 IPR037176 -
Acco01g2139 315 CDD TLP-PA 26 249 - -
Acco01g2139 315 SMART tha2 27 250 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2139 Acco-ChrAcco01 37299419 37302564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2139 9 250 Receptor kinase-like Gene Family AT5G38280 47.755 1.03e-81 258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g2139 01 37299419 37302564 Acco01g2139 01 37299419 37302564 ECH
Acco01g2139 01 37299419 37302564 Acco12g1353 12 19260113 19262302 ECH
Acco01g2139 01 37299419 37302564 Acco11g2390 11 37200455 37201650 ECH