Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi1g0811 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g02145 . . . . . Pste2g00853 . . . . . Pumo10g02049 . Pvu9g1854 . Rops10g00643 . Seca4g03095 . Spst9g02226 . . . . . . . . . . . Vian4g00841 . . . Vimu10g01210 . Viun9g01191 . . . .
Vvi1g0812 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0813 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0814 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0815 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0816 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0817 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0818 . Acco04g2589 . Accr8g00162 . . . . . . . . . . . Alju06g2565 . . . . . . . . . Bisa08g1962 . . . . . . . Dere03g0799 . . . Enph6g0614 . Glsi02g0715 . . . . . . . . . . . . . . . . . . . . . Lapu3g01110 . . . . . . Lele21g1796 Lele22g1772 Lele23g0212 Lele24g1732 . Lja4g2736 . . . . . . . Mibi09g0248 . . . . . . . Prci4g2876 . . . Pste6g02248 . . . . . Pumo4g01398 . Pvu3g2060 . Rops2g03995 . Seca12g01530 . Spst3g04581 . . . . . . . . . . . Vian1g01181 . . . Vimu7g00681 . Viun3g04436 . . . .
Vvi1g0819 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0820 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Vvi Vvi1g0811 Chr1 8292775 8293469 -
Phco Phco7g02145 Chr7 38064320 38065432 +
Pste Pste2g00853 Chr2 9130610 9132033 +
Pumo Pumo10g02049 Chr10 27556231 27557933 +
Pvu Pvu9g1854 Chr9 26388869 26390326 +
Rops Rops10g00643 Chr10 15752575 15753913 -
Seca Seca4g03095 Chr4 53090413 53091707 +
Spst Spst9g02226 Chr9 50304589 50305875 +
Vian Vian4g00841 Chr4 11244615 11245671 -
Vimu Vimu10g01210 Chr10 11966894 11967925 -
Viun Viun9g01191 Chr9 10887329 10888691 -
Vvi Vvi1g0812 Chr1 8296467 8297264 +
Vvi Vvi1g0813 Chr1 8304090 8304305 -
Vvi Vvi1g0814 Chr1 8304562 8305015 +
Vvi Vvi1g0815 Chr1 8307232 8312598 -
Vvi Vvi1g0816 Chr1 8325835 8331871 +
Vvi Vvi1g0817 Chr1 8344693 8345316 -
Vvi Vvi1g0818 Chr1 8351970 8352795 -
Acco Acco04g2589 Chr04 42788465 42789455 +
Accr Accr8g00162 Chr8 2263236 2264130 -
Alju Alju06g2565 Chr06 52758250 52759143 +
Bisa Bisa08g1962 Chr08 47179327 47180087 -
Dere Dere03g0799 Chr03 12541105 12541993 +
Enph Enph6g0614 Chr6 9386098 9387637 +
Glsi Glsi02g0715 Chr02 4673988 4674780 +
Lapu Lapu3g01110 Chr3 11969412 11971156 -
Lele Lele21g1796 Chr21 25621275 25622156 +
Lele Lele22g1772 Chr22 22941374 22942132 +
Lele Lele23g0212 Chr23 1411059 1412346 -
Lele Lele24g1732 Chr24 22590536 22591291 +
Lja Lja4g2736 Chr4 43348478 43357542 +
Mibi Mibi09g0248 Chr09 3038958 3039747 -
Prci Prci4g2876 Chr4 40740260 40741382 +
Pste Pste6g02248 Chr6 10751319 10752365 +
Pumo Pumo4g01398 Chr4 17764003 17765332 -
Pvu Pvu3g2060 Chr3 41256378 41257472 -
Rops Rops2g03995 Chr2 73046463 73048135 -
Seca Seca12g01530 Chr12 16052723 16054844 -
Spst Spst3g04581 Chr3 97567571 97568354 +
Vian Vian1g01181 Chr1 12650554 12651377 -
Vimu Vimu7g00681 Chr7 6844786 6845705 +
Viun Viun3g04436 Chr3 52170338 52171502 +
Vvi Vvi1g0819 Chr1 8398596 8398912 +
Vvi Vvi1g0820 Chr1 8527687 8528181 +
Acco Acco04g2589 Chr04 42788465 42789455 +
Accr Accr8g00162 Chr8 2263236 2264130 -
Alju Alju06g2565 Chr06 52758250 52759143 +
Bisa Bisa08g1962 Chr08 47179327 47180087 -
Dere Dere03g0799 Chr03 12541105 12541993 +
Enph Enph6g0614 Chr6 9386098 9387637 +
Glsi Glsi02g0715 Chr02 4673988 4674780 +
Lapu Lapu3g01110 Chr3 11969412 11971156 -
Lele Lele21g1796 Chr21 25621275 25622156 +
Lele Lele22g1772 Chr22 22941374 22942132 +
Lele Lele23g0212 Chr23 1411059 1412346 -
Lele Lele24g1732 Chr24 22590536 22591291 +
Mibi Mibi09g0248 Chr09 3038958 3039747 -
Phco Phco7g02145 Chr7 38064320 38065432 +
Prci Prci4g2876 Chr4 40740260 40741382 +
Pste Pste6g02248 Chr6 10751319 10752365 +
Pste Pste2g00853 Chr2 9130610 9132033 +
Pumo Pumo4g01398 Chr4 17764003 17765332 -
Pumo Pumo10g02049 Chr10 27556231 27557933 +
Pvu Pvu3g2060 Chr3 41256378 41257472 -
Pvu Pvu9g1854 Chr9 26388869 26390326 +
Rops Rops2g03995 Chr2 73046463 73048135 -
Rops Rops10g00643 Chr10 15752575 15753913 -
Seca Seca12g01530 Chr12 16052723 16054844 -
Seca Seca4g03095 Chr4 53090413 53091707 +
Spst Spst3g04581 Chr3 97567571 97568354 +
Spst Spst9g02226 Chr9 50304589 50305875 +
Vian Vian1g01181 Chr1 12650554 12651377 -
Vian Vian4g00841 Chr4 11244615 11245671 -
Vimu Vimu7g00681 Chr7 6844786 6845705 +
Vimu Vimu10g01210 Chr10 11966894 11967925 -
Viun Viun3g04436 Chr3 52170338 52171502 +
Viun Viun9g01191 Chr9 10887329 10888691 -