Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g0900 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cca10g01982 . . . . . . . . . . . . . . . . . . . . . Lal5g0431 . . . . . . . . . Lasa5g00176 . . . . . . . . . . . . . Mepo5g02529 . Mesa9g00239 . . . . . . . Phco10g00046 . . . . . Pste3g01284 . . . . . Pumo11g00039 . Pvu5g0041 . Rops7g02018 . Seca4g07817 . Spst5g01897 . Ssu8g1936 . . . . . Trre5g00161 . . . Vian11g01224 . Vifa2g00057 . Vimu4g02309 . Viun1g00067 . Vivi3g07695 . Vra5g2694 .
Vvi19g0901 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cca10g01979 . . . . . . . . . . . . . . . . . . . . . Lal5g0432 . . . . . . . . . Lasa5g00177 . . . . . . . . . . . . . Mepo5g02528 . Mesa9g00238 . . . . . . . Phco10g00049 . . . . . Pste3g01281 . . . . . Pumo11g00037 . Pvu5g0045 . . . . . Spst5g01898 . Ssu8g1933 . . . . . Trre5g00160 . . . Vian11g01222 . Vifa2g00058 . Vimu4g02307 . Viun1g00083 . Vivi3g07688 . Vra5g2692 .
Vvi19g0902 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0903 . . . . . . Aed1g2733 . . . . . . . . . . . . . . . . . . . . . . . Cca10g01976 . . . . . . . . . . . . . . . . . . . . Lal3g1221 Lal5g0434 . . . . . . . . . . . . . . . . . . . . . . . Mepo5g02525 . Mesa9g00231 . . . . . . . Phco10g00055 . . . . . Pste3g01274 . . . . . Pumo11g00031 . Pvu5g0050 . Rops7g02024 . Seca4g07801 . Spst5g01902 . Ssu8g1931 . . . . . Trre5g00156 . . . Vian11g01217 . . . Vimu4g02303 . Viun1g00090 . Vivi3g07677 . Vra5g2688 .
Vvi19g0904 . . . . . . Aed1g2735 . . . . . . . . . . . . . . . . . . . . . . . Cca10g01974 . . . . . . . . . . . . . . . . . . . . Lal3g1222 . . . . . . . . . . Lasa5g00183 . . . . . . . . . . . . . Mepo5g02520 . Mesa9g00227 . . . . . . . Phco10g00057 . . . Psa5g5311 . Pste3g01266 . . . . . . . Pvu5g0052 . Rops7g02027 . Seca4g07798 . Spst5g01904 . Ssu8g1929 . . . . . Trre5g00154 . . . Vian11g01215 . Vifa2g00066 . . . Viun1g00093 . . . Vra5g2686 .
Vvi19g0905 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0906 . . . . . . Aed1g2736 . . . . . . . . . . . . . . . . . . . . . . . Cca10g01972 . . . . . . . . . . . . . . . . . . . . Lal3g1223 Lal5g0436 . . . . . . . . . . . . . . . . . . . . . . . Mepo5g02518 . Mesa9g00225 . . . . . . . Phco10g00058 . . . . . Pste3g01263 . . . . . Pumo11g00029 . Pvu5g0053 . Rops7g02028 . Seca4g07796 . Spst5g01906 . Ssu8g1928 . . . . . Trre5g00153 . . . Vian11g01214 . . . Vimu4g02299 . Viun1g00095 . . . Vra5g2685 .
Vvi19g0907 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0908 . . . . . . Aed1g2737 . . . . . . . . . . . . . . . . . . . . . . . Cca10g01971 . . . . . . . . . . . . . . . . . . . . Lal3g1224 . . . . . . . . . . . . . . . . . . . . . . . . Mepo5g02517 . Mesa9g00224 . . . . . . . Phco10g00059 . . . . . Pste3g01258 . . . . . Pumo11g00027 . Pvu5g0054 . Rops7g02030 . Seca4g07795 . Spst5g01908 . Ssu8g1927 . . . . . Trre5g00152 . . . Vian11g01213 . . . Vimu4g02297 . Viun1g00096 . . . Vra5g2684 .
Vvi19g0909 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 2763 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi19g0900 Chr19 10465810 10466295 +
Cca Cca10g01982 Chr10 37791672 37792646 -
Lal Lal5g0431 Chr5 4302282 4302773 +
Lasa Lasa5g00176 Chr5 7974022 7974501 +
Mepo Mepo5g02529 Chr5 30644979 30645745 -
Mesa Mesa9g00239 Chr9 5149237 5149725 -
Phco Phco10g00046 Chr10 329096 329581 +
Pste Pste3g01284 Chr3 8095561 8096043 -
Pumo Pumo11g00039 Chr11 1663008 1664056 -
Pvu Pvu5g0041 Chr5 303155 304019 +
Rops Rops7g02018 Chr7 33665596 33666090 +
Seca Seca4g07817 Chr4 180238196 180238687 +
Spst Spst5g01897 Chr5 54672313 54672798 +
Ssu Ssu8g1936 Chr8 50319790 50320284 -
Trre Trre5g00161 Chr5 945699 946178 -
Vian Vian11g01224 Chr11 20007364 20007846 -
Vifa Vifa2g00057 Chr2 4624660 4625139 +
Vimu Vimu4g02309 Chr4 24964537 24965019 -
Viun Viun1g00067 Chr1 532101 532883 +
Vivi Vivi3g07695 Chr3 213881390 213882116 -
Vra Vra5g2694 Chr5 33616538 33617294 -
Vvi Vvi19g0901 Chr19 10490426 10497818 +
Cca Cca10g01979 Chr10 37740874 37744670 +
Lal Lal5g0432 Chr5 4307753 4314666 +
Lasa Lasa5g00177 Chr5 7981426 7984632 +
Mepo Mepo5g02528 Chr5 30631561 30637549 -
Mesa Mesa9g00238 Chr9 5125564 5128485 -
Phco Phco10g00049 Chr10 342772 346894 +
Pste Pste3g01281 Chr3 8069312 8074071 -
Pumo Pumo11g00037 Chr11 1551702 1556679 -
Pvu Pvu5g0045 Chr5 323371 327501 +
Spst Spst5g01898 Chr5 54680406 54684380 +
Ssu Ssu8g1933 Chr8 50291446 50295942 -
Trre Trre5g00160 Chr5 937671 941814 -
Vian Vian11g01222 Chr11 19994353 19997864 -
Vifa Vifa2g00058 Chr2 4865782 4869058 +
Vimu Vimu4g02307 Chr4 24954749 24957311 -
Viun Viun1g00083 Chr1 584774 588735 +
Vivi Vivi3g07688 Chr3 213803512 213805811 +
Vra Vra5g2692 Chr5 33605754 33609753 -
Vvi Vvi19g0902 Chr19 10503115 10505322 +
Vvi Vvi19g0903 Chr19 10511166 10515457 -
Aed Aed1g2733 Chr1 22657849 22661466 -
Cca Cca10g01976 Chr10 37703204 37707756 +
Lal Lal3g1221 Chr3 17695760 17699541 -
Lal Lal5g0434 Chr5 4324114 4324865 -
Mepo Mepo5g02525 Chr5 30558372 30562513 +
Mesa Mesa9g00231 Chr9 5033210 5036677 +
Phco Phco10g00055 Chr10 376839 379974 -
Pste Pste3g01274 Chr3 8026484 8029798 +
Pumo Pumo11g00031 Chr11 1491511 1496101 +
Pvu Pvu5g0050 Chr5 373876 377272 -
Rops Rops7g02024 Chr7 33774270 33778379 -
Seca Seca4g07801 Chr4 179703464 179709919 +
Spst Spst5g01902 Chr5 54703623 54707745 -
Ssu Ssu8g1931 Chr8 50240517 50243920 +
Trre Trre5g00156 Chr5 905449 908839 +
Vian Vian11g01217 Chr11 19937027 19940257 +
Vimu Vimu4g02303 Chr4 24924852 24928116 +
Viun Viun1g00090 Chr1 643341 647155 -
Vivi Vivi3g07677 Chr3 213664408 213667653 -
Vra Vra5g2688 Chr5 33578827 33582673 +
Vvi Vvi19g0904 Chr19 10527535 10530525 +
Aed Aed1g2735 Chr1 22667834 22671229 +
Cca Cca10g01974 Chr10 37665237 37668209 -
Lal Lal3g1222 Chr3 17709701 17712661 +
Lasa Lasa5g00183 Chr5 8078717 8081653 -
Mepo Mepo5g02520 Chr5 30493101 30496294 -
Mesa Mesa9g00227 Chr9 4982237 4986158 -
Phco Phco10g00057 Chr10 393452 396418 +
Psa Psa5g5311 Chr5 463895680 463899636 +
Pste Pste3g01266 Chr3 8009585 8012563 -
Pvu Pvu5g0052 Chr5 386437 390455 +
Rops Rops7g02027 Chr7 33801661 33804651 +
Seca Seca4g07798 Chr4 179621524 179625625 -
Spst Spst5g01904 Chr5 54718003 54720972 +
Ssu Ssu8g1929 Chr8 50221024 50224005 -
Trre Trre5g00154 Chr5 887432 890374 -
Vian Vian11g01215 Chr11 19910068 19913034 -
Vifa Vifa2g00066 Chr2 5233369 5236305 -
Viun Viun1g00093 Chr1 658307 662425 +
Vra Vra5g2686 Chr5 33568537 33571773 -
Vvi Vvi19g0905 Chr19 10535196 10540888 -
Vvi Vvi19g0906 Chr19 10551208 10562166 -
Aed Aed1g2736 Chr1 22673465 22681411 -
Cca Cca10g01972 Chr10 37641153 37644050 +
Lal Lal3g1223 Chr3 17719173 17725427 -
Lal Lal5g0436 Chr5 4339898 4354627 -
Mepo Mepo5g02518 Chr5 30469362 30475878 +
Mesa Mesa9g00225 Chr9 4943033 4947113 +
Phco Phco10g00058 Chr10 399139 412807 -
Pste Pste3g01263 Chr3 7993160 7996690 +
Pumo Pumo11g00029 Chr11 1448691 1457781 +
Pvu Pvu5g0053 Chr5 392472 400475 -
Rops Rops7g02028 Chr7 33806197 33818218 -
Seca Seca4g07796 Chr4 179458762 179467511 +
Spst Spst5g01906 Chr5 54738107 54740526 -
Ssu Ssu8g1928 Chr8 50197271 50205660 +
Trre Trre5g00153 Chr5 881103 885921 +
Vian Vian11g01214 Chr11 19898761 19901184 +
Vimu Vimu4g02299 Chr4 24903772 24906199 +
Viun Viun1g00095 Chr1 664753 676105 -
Vra Vra5g2685 Chr5 33559532 33566426 +
Vvi Vvi19g0907 Chr19 10569070 10570617 +
Vvi Vvi19g0908 Chr19 10605368 10619600 +
Aed Aed1g2737 Chr1 22692355 22701020 +
Cca Cca10g01971 Chr10 37607739 37619375 -
Lal Lal3g1224 Chr3 17741954 17752540 +
Mepo Mepo5g02517 Chr5 30450776 30459233 -
Mesa Mesa9g00224 Chr9 4927815 4935420 -
Phco Phco10g00059 Chr10 415950 426123 +
Pste Pste3g01258 Chr3 7965860 7975605 -
Pumo Pumo11g00027 Chr11 1425753 1437166 -
Pvu Pvu5g0054 Chr5 404608 413991 +
Rops Rops7g02030 Chr7 33866386 33876836 +
Seca Seca4g07795 Chr4 179422280 179440297 -
Spst Spst5g01908 Chr5 54745805 54751379 +
Ssu Ssu8g1927 Chr8 50148360 50165871 -
Trre Trre5g00152 Chr5 866567 873893 -
Vian Vian11g01213 Chr11 19852956 19870229 -
Vimu Vimu4g02297 Chr4 24888677 24899548 -
Viun Viun1g00096 Chr1 681693 697743 +
Vra Vra5g2684 Chr5 33544844 33556427 -
Vvi Vvi19g0909 Chr19 10628725 10656818 +