LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi19g0904	ATGGTCATGGATGAAGAAGCACCACTGTCTGCTGAACTTCCTAAGAAACTCCCAGCTGTTGATTTCTCTGATTCTGGTGATCCAACCAAGTCCCTCACCATCAAGATAGCAAGCTCTAGCTGCAAACCAGGTAAGGAGTTTCTAGCTCCCCTCATATCTCCAAACATAAAAACCTCAGCTGAACCATCACCATACAACTCTCCATCACTCATCTCTCCACCATCATCAGCATTTGTTTCTGCTCTGCAGTCACCATACATATCTCCAAGAGCTCAAATCCCCAATCTCCAGGAGAACCCAACTCCAGTTATCCACCCGTCTCCGCCCATATCATACTGTGGTTCCCAGTCTGATGACATCCCCAGCTGTTCCTACACTCCCCCGCCAGAGAGAAATGATTTTTCTGATGACCCAACTGACCCAAAACTCAAATTTGTGACCTGCGTCCCAGTTCCAGACCCGGCTCCTCCTAGAATCTCCTTCTCATTCCCAGTCCCTCGAATTTCCTTTGCAAAAGGCTCTGTTTCTTCGGCTTCTAATGCAAAACTCAGGAGCTGTGACGTTTACATAGGCTTCCATGGCCAGAATCCCAACTTGGTGCGCATTTGTAAGTGGCTTAAATCAGAGCTCGAGCTCCAGGGAATTGCTTGCTTTATTGCAGATAGAGCAAAGTATTCAGATAATCAAAGTCATGAGATTGCTGATCGTGTCATCTGCTCAGTGACGCATGGCATTGTGGTTGTCACTAGTTCTACCTTCCTCAACCATCACAGCCTAGAGGAAATAAGATTCTTTGCTCAGAAGAAGAACTTGATCCCCTTCTTCTTTGGCACAGACCCTGCTGAGATCATGAGTCTTCTCAACCACAATTCAATTGACAAAGAATGCAAAGAAGCAATTGAAAGATTGATGAAGTCTCATGAATTCAAGCTGGAAGCCAGCGAGGGGAACTGGAGAAGCTGTGTATCTAAAGCCGCTGGGATTTTAAGGGCAAAGCTTGGAAGGAGAAGTGTCGCCGAGAAGGAGGTGGAAGGATTTGAGGAGTTACCTTTCCCAAGAAACAGATTTTTTGTAGGAAGAGAGAAGGAGATGATGGAAATGGAAACTGCCTTCTTTGAAAGTGGGGATTGTCTGGAGCAAGATGGTTCTGTGCCGATTGTTAAAGGAGGAGCAACTGGGCAATGTGATGGTTTTGCAGATGAGGAAAGCGATGCAGGCACAACTAGAGGAGAGAAGTATATTAATTTAGAGGTGGGTAAGTGCAAGGAGCCAACTTTAGAGGCTTGGGTTGAACCAGTAGTTGGAAGAAGCTCATTGAAGAGGCCAAAATACAAGAAATCAAAAAGTGGAAACTATAAGAGCTTTGGTAGCAGCGTGATCTGCATTAATGGAGGTCCTGGTGTTGGAAAAACGGAGCTTGCATTGGAGTTTGCTTACAGGTATTCCCAAAGATACAAGATGGTTTTGTGGGTTGGAGGAGAAGCTCGGTATTTTAGGCAGAGTATATTGAACCTATCACTAAATCTGGGATTGGATGTCAGTGCCGATGCTGAGAAGGAAAGAGGGAGGATCAGAAGTTTTGAGGAGCAGGAATTTGAAGCATTCAAGAGAGTTAAGAGGGAGCTGTTCCGGGACATGCCTTATTTGCTGATTATCGACAACCTTGAGACCGAGAAAGAATGGTGGGAAGGGAAGGATCTACATGATCTAATCCCCAGGAACACCGGAGGGTCCCATGTGATTGTTACCACCAGGCTTTCCAAGGTAATGAATTTTGACATTATGCATCTTCCACCATTGTCCTTGTCTGATGCAATGATTTTGATTAGAGGGAAAAGGAAGAAAGACTATCCAGCTGAGGAGCTAGATTTTCTCATGAAATTCGATGAGAAATTGGGAAGGTCTAGCTTTGGTTTGTGGGTGATTGGATCACTGCTTTCTGAACTAGCAATTTCCCCATCTGTTCTCTTTGAAGCTGTGAACCAGGTCCCATTAAATGAAGGTTCTAATTGCTCTAATTTAAGCATTCTTGACCAACAATTCTGCAGAAACAATCCTTTTCTAATGAAAGTTCTGGGATTTTGCTTCTCTGTTTTACAACAAACAAATGGGAAAAGGAACCTCCTTGCCTCTAGAATGCTTCTTGTTGGTGCTTGGTTTGCCACTGCACCCGTTTCAGCGAATTTACTTGCCACTGCAGCAAATCATATACCAACCACTGGAAACCGGTTGAGGAAGTGGACCAAGTGCCTGAGTTTGGCACTTTGTTGCTGCTCTGGTTGTTCCTTCTCACCACAAACTTGGAAAAGCGAAGAGGATTCAGCCCTTCTTCTCGTTAAACTAGGATTGGCCCGAAGAGCTAACAGACAGGCTGGAATTTGGATCGAGTTCCACTCCATAACTCAGATATTTGCCAGAAGGAAAGAGGGTCTACCTGCAGCCAGGGCAACAGTCTTAGGTGTAAGGAAAATTGGAAACCCTTCGGTAAATTCAGACCACCTATGGGCTTCTGCCTTCCTTGTATTTGGCTTTAAATCCGAGCCTCCACTGGTCCAACTAAAGGCAATTGACATGGTGTTATTCATCAAGAAGACTGCTCTCCCTCTAGCAATTAGGGCCTTCACCACTTTCTCCCGGTGCAACTCAGCTTTGGAGCTCCTGAAGGTATGCACAAATGTGCTTGAGGAAGTAGAGAAATCATTTGTGTCTCAGATACAGGACTGGTGCCATGGCTCACTTTGCTGGAAGAAAAAAGTACAGTCTAGTCAAAGGGTGGATGAGTATGTATGGCAGGATGTGACATTGTTGAAGGCTACATTGCTGGAGACCAGAGCAAAGTTGCTGTTGAGAGGTGGACATTTTGATAGCGGGGAGGATCTCTGTAGAACTTGTATCAGTATCAGGACAGTAATGCTGGGCCATAACCATGCCCTAACCTTGGCTGCTCAGGAAACATTGGCAAAGTTAGTAAGATTACGGAGTAAAATATGA	2991	0.4504	MVMDEEAPLSAELPKKLPAVDFSDSGDPTKSLTIKIASSSCKPGKEFLAPLISPNIKTSAEPSPYNSPSLISPPSSAFVSALQSPYISPRAQIPNLQENPTPVIHPSPPISYCGSQSDDIPSCSYTPPPERNDFSDDPTDPKLKFVTCVPVPDPAPPRISFSFPVPRISFAKGSVSSASNAKLRSCDVYIGFHGQNPNLVRICKWLKSELELQGIACFIADRAKYSDNQSHEIADRVICSVTHGIVVVTSSTFLNHHSLEEIRFFAQKKNLIPFFFGTDPAEIMSLLNHNSIDKECKEAIERLMKSHEFKLEASEGNWRSCVSKAAGILRAKLGRRSVAEKEVEGFEELPFPRNRFFVGREKEMMEMETAFFESGDCLEQDGSVPIVKGGATGQCDGFADEESDAGTTRGEKYINLEVGKCKEPTLEAWVEPVVGRSSLKRPKYKKSKSGNYKSFGSSVICINGGPGVGKTELALEFAYRYSQRYKMVLWVGGEARYFRQSILNLSLNLGLDVSADAEKERGRIRSFEEQEFEAFKRVKRELFRDMPYLLIIDNLETEKEWWEGKDLHDLIPRNTGGSHVIVTTRLSKVMNFDIMHLPPLSLSDAMILIRGKRKKDYPAEELDFLMKFDEKLGRSSFGLWVIGSLLSELAISPSVLFEAVNQVPLNEGSNCSNLSILDQQFCRNNPFLMKVLGFCFSVLQQTNGKRNLLASRMLLVGAWFATAPVSANLLATAANHIPTTGNRLRKWTKCLSLALCCCSGCSFSPQTWKSEEDSALLLVKLGLARRANRQAGIWIEFHSITQIFARRKEGLPAARATVLGVRKIGNPSVNSDHLWASAFLVFGFKSEPPLVQLKAIDMVLFIKKTALPLAIRAFTTFSRCNSALELLKVCTNVLEEVEKSFVSQIQDWCHGSLCWKKKVQSSQRVDEYVWQDVTLLKATLLETRAKLLLRGGHFDSGEDLCRTCISIRTVMLGHNHALTLAAQETLAKLVRLRSKI*	997

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi19g0904	996	Gene3D	-	422	593	IPR027417	-
	Vvi19g0904	996	Gene3D	-	167	306	IPR035897	-
	Vvi19g0904	996	ProSiteProfiles	TIR domain profile.	184	308	IPR000157	GO:0007165
	Vvi19g0904	996	SUPERFAMILY	Toll/Interleukin receptor TIR domain	185	287	IPR035897	-
	Vvi19g0904	996	SMART	AAA_5	456	613	IPR003593	GO:0016887
	Vvi19g0904	996	PANTHER	DNA REPAIR PROTEIN RADA	62	991	-	-
	Vvi19g0904	996	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	455	666	IPR027417	-
	Vvi19g0904	996	Pfam	NB-ARC domain	454	592	IPR002182	GO:0043531
	Vvi19g0904	996	FunFam	p-loop containing nucleoside triphosphate hydrolase superfamily protein	436	595	-	-
	Vvi19g0904	996	FunFam	p-loop containing nucleoside triphosphate hydrolase superfamily protein	167	305	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi19g0904	Vvi-Chr19	10527535	10530525	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi19g0904	-		-	vvi:100246258	1988.39