Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00479 ATGGCTGAAAGTGCAGTGACCCTTCTGGCCGTTCTAGCTGAAAAATTGTTGACGTTACTGAAGGAAGAAGGAAAAACATTAAGCGGGGTTCACAAAGATGTTGAACGAATCAAGAATCTGGTAAAAAATATCAAGCCTTTCATGAAGAATGCAGAGGAGAAGGTACTGATTGAAGAGAGCGTGAAAAATTGGATGAATGGGTTGAGGGAAGTGATGTTTCGCATGGAGGATGTGGTTGATCTGTATTTGTTCAAAGTGGCAAAACGTGATGGAGTTCGTTATGGAATGAGAAAGAAGATCAAAAGTATAAAACATCGTCATCGTATATCATCTGAGATTAAAGATATCAGACAAACCCTAGATGATCTCTTCAGTATCAGAACAAGACTACAACTCCTATCCTCTCATGGAGACACTCTTCCCAATACAATTCCAAGGGCTCATTTTGTGAAGGAATCTCAACTTGTTGGTATTGAACATAACATGCAAAAATTCAGAGATTGGCTGGCAAAAGCTAGTAGTCCACTGTTGGTGGTGGTAGGCCCAGCGGGAATAGGTAAAACTTCAATAGTGAAGAATGTGTATAACAAGCAAACAAAATTGAACCAGCCGAAGAAAAAGAAGGATTTCGACTTTTGTGTATGGATAACCATGACTCAAGCTGATTCTTGGTACCCAATAATGCAAATTAAAGAAGAAATACTTATGGCAGATCCTCGTGGATCATCTTCATTGAGGAGTGCAACAAGGGAGAATCTTACAGAAAAATTGGGAGAATACTTCATAGATAAGAGATGCCTCATCGTGTTAGATGATGTGAAGGAACTAAAAGTTTGGGACGTTATCCAATTTGCCATACCTCAACATCGGGTTATTATCACTACACAACGTGATGATTTTCCAAATAATATTGGAAGTGATGATACATCTGTTGAAAAAATCAAGTTAGAACCTTTGTCTTTAGAAGATGCTTTGAAGCTCTTTCACCAGAAGGTTAAGCATGTGCAATTCCCTGAGTTAAGTCAATTGTCCAAAGAATTCATGGAAAAATGCAATGGGGTGCCTCTAGCCATTGTGGCCATTTCTAGTCTCCTTTCCACTATGAAATCTGCCATTGAATGGCGAAGGGTACGTGATGATCTTGGTTCATTATTGCGAAGTCACCATCATCTTGAAACGGTCCGACATGTATTGTTGCAAAGTTACCAAGAACTTCCTTATCGCCTCAAACAATGCTTCTTATACTTTGGCCATTTCCCTCAAGGCTATTCCATTAGTCGCAAGAGGCTTATTCGCTTGTGGATAGCAGAGGATTTTGTAGAAGGAGATACCCAGAACAAATCAATGGAGGAACTTGGAGGTGAATACCTGGCTGAACTAATCTGTAGAGGCTTGGTTCATGCTTCACGAGTTGATTTTGATGGAATACCTAGAAGCTGTCATGTGTATAACCTCATGCATGAGATCATATCTAGTATTTGTAAAGACCAAATGTTTTGTCATGTAATGGAAGATGTAAGCACACCAGTGAACTCCAACATGGATTTCATTCATAGGCGTTTATCAATTATAAAGAAGACTGATTCTGCTACTATGGAAAGAGACCAAAAGTGGGGAAAAGTTAGGTCTTGTTTTGTTTTCGATGATGCTAAGAAGTGGCAGGTGAACAACCATTTTTTCTCTAGTTTTGAGTTTCTGATTCGATTAGACTTGTCTGATGCATGTCTATCTGTCGATGTTCTTCCTGAACAAGTTGGTAATCTATTAAACTTGAAATACTTGAGCCTAAGGAACACCAACATCATGTCACTTCCAGAGTCCATTGGAAACCTAGTGAATCTGCAGACTCTAGACCTAAAACAAACTAAATTGCATGAAGTGAAGATCGATAAGCTTGTCAAATTACGCCATCTCCTAGCTTACTATGTCAGTGATCAAAGTTCAGAATTCTACTGTTTAGAAGGACTAAGGTTAAGTGAAGGAGTTCAAAATCTAGAATCATTGCAGAATCTATCATATTTAGATGTAACTGGTGGTAGAATAATAAAGGGACTGCAAAAACTAACGAAGTTAAGGAAGCTGGGAATTATAAAGCTAGAAACAACACATGGTGAAGCACTGTGCAATTCTATAGAGCACATGATCAATCTATGTTCTCTAAGCATTGGGGCTTTAGGAAAACAAGACATGCTAAAGTTACAATCTTTAAATCCTCCATTGTCCCTTAAACGCCTTTACCTATATGGGCGTTTAGGAGAACTTCCTACTTGGATATCAACTGTTCCAAACCTTATCAGATTGTACTTGAAGTGGTCTGATCTAAAGCAAGATCCATTACATTACCTTAAGGACCTGCCACAATTGTTGTACCTTGAGTTATATGATGCATATAAAGGTGAACGGTTGGATTTCGGTAATGGATGGTTGAAACTGAAGGTTTTGTACTTAGGATTGTTGCCAAACTTGAAGACCATAGAGATTGGTAAGGGAAAAGTTCCTTGTCTTGAAATATTGAAGATAGGGAGATGCCATCAAATGATAAGGCTCCCCAAAGATATACAAAACTTGAAGCATCTTGAAAAGCTTTATCTTTATGATATGCATGAACAGTTTATAAAAAGATTATGTGATGAGCGAAGTGAAGACTATTGGATTATTAACAAAATACCGCTCGTGGAATACTCCAACAACGACCATTTTGCCTCTTTTTCATGA 2715 0.3831 MAESAVTLLAVLAEKLLTLLKEEGKTLSGVHKDVERIKNLVKNIKPFMKNAEEKVLIEESVKNWMNGLREVMFRMEDVVDLYLFKVAKRDGVRYGMRKKIKSIKHRHRISSEIKDIRQTLDDLFSIRTRLQLLSSHGDTLPNTIPRAHFVKESQLVGIEHNMQKFRDWLAKASSPLLVVVGPAGIGKTSIVKNVYNKQTKLNQPKKKKDFDFCVWITMTQADSWYPIMQIKEEILMADPRGSSSLRSATRENLTEKLGEYFIDKRCLIVLDDVKELKVWDVIQFAIPQHRVIITTQRDDFPNNIGSDDTSVEKIKLEPLSLEDALKLFHQKVKHVQFPELSQLSKEFMEKCNGVPLAIVAISSLLSTMKSAIEWRRVRDDLGSLLRSHHHLETVRHVLLQSYQELPYRLKQCFLYFGHFPQGYSISRKRLIRLWIAEDFVEGDTQNKSMEELGGEYLAELICRGLVHASRVDFDGIPRSCHVYNLMHEIISSICKDQMFCHVMEDVSTPVNSNMDFIHRRLSIIKKTDSATMERDQKWGKVRSCFVFDDAKKWQVNNHFFSSFEFLIRLDLSDACLSVDVLPEQVGNLLNLKYLSLRNTNIMSLPESIGNLVNLQTLDLKQTKLHEVKIDKLVKLRHLLAYYVSDQSSEFYCLEGLRLSEGVQNLESLQNLSYLDVTGGRIIKGLQKLTKLRKLGIIKLETTHGEALCNSIEHMINLCSLSIGALGKQDMLKLQSLNPPLSLKRLYLYGRLGELPTWISTVPNLIRLYLKWSDLKQDPLHYLKDLPQLLYLELYDAYKGERLDFGNGWLKLKVLYLGLLPNLKTIEIGKGKVPCLEILKIGRCHQMIRLPKDIQNLKHLEKLYLYDMHEQFIKRLCDERSEDYWIINKIPLVEYSNNDHFASFS 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00479 904 FunFam Probable disease resistance protein At1g63360 402 492 - -
Vian6g00479 904 Gene3D - 402 493 IPR036388 -
Vian6g00479 904 Pfam Rx N-terminal domain 9 107 IPR041118 -
Vian6g00479 904 Gene3D Ribonuclease Inhibitor 535 644 IPR032675 -
Vian6g00479 904 PRINTS Disease resistance protein signature 351 365 - -
Vian6g00479 904 PRINTS Disease resistance protein signature 609 625 - -
Vian6g00479 904 PRINTS Disease resistance protein signature 176 191 - -
Vian6g00479 904 PRINTS Disease resistance protein signature 260 274 - -
Vian6g00479 904 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 143 416 IPR027417 -
Vian6g00479 904 PANTHER DISEASE RESISTANCE PROTEIN RP 60 839 IPR044974 GO:0006952
Vian6g00479 904 SUPERFAMILY L domain-like 483 877 - -
Vian6g00479 904 Gene3D - 9 110 - -
Vian6g00479 904 Gene3D Ribonuclease Inhibitor 645 880 IPR032675 -
Vian6g00479 904 Gene3D - 319 401 IPR042197 -
Vian6g00479 904 Gene3D - 141 313 IPR027417 -
Vian6g00479 904 Pfam NB-ARC domain 159 403 IPR002182 GO:0043531
Vian6g00479 904 CDD RX-CC_like 2 125 IPR038005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00479 Vian-Chr6 19649048 19659546 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00479 581 699 Receptor kinase-like Gene Family AT3G47570 33.058 2.89e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00479 K13457 - gmx:100779508 887.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00479 6 19649048 19659546 Vian6g00479 6 19649048 19659546 ECH