Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi1g1281 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1282 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1283 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1284 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1285 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva11g00297 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1286 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1287 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva11g00298 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1288 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1289 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva11g00309 . Car07g02138 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1290 . . . . Adu03g04345 Adu10g02947 Aed11g1002 . . . . . . . . . . . . . . . . . . . . . . . Cca06g00086 . . . . . . . . . . . . . . . . . Lal6g1134 . . . . . Lan11g1149 . . . . . Lapu3g02724 Lapu2g01791 Lasa7g03732 . . . . . . . . . . . . . Mepo2g03653 Mepo4g01290 Mesa13g01521 . . . . . Phac2g02948 . Phco4g02217 . . . . . Pste3g02325 Pste1g03749 . . . . Pumo6g01443 . Pvu2g1967 Pvu3g0083 Rops2g01568 Rops1g00322 . Seca10g05276 . Spst2g02184 Ssu2g1041 . . . . . . . . . Vian1g02854 Vian10g01847 Vifa6g01976 Vifa3g03808 Vimu11g01549 Vimu7g00421 Viun3g01979 Viun2g00050 . . Vra11g1307 .
   
Previous Page 129 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Adu Adu03g04345 Chr03 132384717 132395611 +
Lapu Lapu3g02724 Chr3 49910957 49931813 -
Lasa Lasa7g03732 Chr7 611860211 611875844 +
Mepo Mepo2g03653 Chr2 45859396 45874379 +
Mesa Mesa13g01521 Chr13 18170964 18185274 -
Phac Phac2g02948 Chr2 31231949 31254742 -
Phco Phco4g02217 Chr4 42852235 42873740 -
Pste Pste3g02325 Chr3 16425524 16437619 +
Pumo Pumo6g01443 Chr6 19663072 19670417 -
Pvu Pvu2g1967 Chr2 34738077 34758793 -
Rops Rops2g01568 Chr2 23239486 23251698 -
Vian Vian1g02854 Chr1 44910277 44928511 -
Vifa Vifa6g01976 Chr6 731338522 731354035 -
Vimu Vimu11g01549 Chr11 18620659 18634830 +
Viun Viun3g01979 Chr3 15623042 15643257 +
Vvi Vvi1g1281 Chr1 18645529 18645942 -
Vvi Vvi1g1282 Chr1 18652712 18653949 -
Vvi Vvi1g1283 Chr1 18657363 18658564 -
Vvi Vvi1g1284 Chr1 18668388 18669651 +
Vvi Vvi1g1285 Chr1 18696471 18697213 -
Bva Bva11g00297 Chr11 6668668 6669164 -
Vvi Vvi1g1286 Chr1 18751209 18752126 +
Vvi Vvi1g1287 Chr1 18753878 18762960 -
Bva Bva11g00298 Chr11 6675440 6683728 +
Vvi Vvi1g1288 Chr1 18797581 18798005 -
Vvi Vvi1g1289 Chr1 18906768 18909678 +
Bva Bva11g00309 Chr11 6859660 6863499 +
Car Car07g02138 Chr07 27793343 27798700 -
Vvi Vvi1g1290 Chr1 18956261 18986588 +
Adu Adu03g04345 Chr03 132384717 132395611 +
Adu Adu10g02947 Chr10 105672226 105673374 +
Aed Aed11g1002 Chr11 15862931 15869634 -
Cca Cca06g00086 Chr06 2104842 2118100 +
Lal Lal6g1134 Chr6 8524151 8534493 -
Lan Lan11g1149 Chr11 15935808 15953901 +
Lapu Lapu3g02724 Chr3 49910957 49931813 -
Lapu Lapu2g01791 Chr2 31576345 31590255 -
Lasa Lasa7g03732 Chr7 611860211 611875844 +
Mepo Mepo2g03653 Chr2 45859396 45874379 +
Mepo Mepo4g01290 Chr4 16585127 16595297 -
Mesa Mesa13g01521 Chr13 18170964 18185274 -
Phac Phac2g02948 Chr2 31231949 31254742 -
Phco Phco4g02217 Chr4 42852235 42873740 -
Pste Pste3g02325 Chr3 16425524 16437619 +
Pste Pste1g03749 Chr1 18358880 18369667 -
Pumo Pumo6g01443 Chr6 19663072 19670417 -
Pvu Pvu2g1967 Chr2 34738077 34758793 -
Pvu Pvu3g0083 Chr3 749580 758817 +
Rops Rops2g01568 Chr2 23239486 23251698 -
Rops Rops1g00322 Chr1 8526863 8537630 -
Seca Seca10g05276 Chr10 120465532 120479090 +
Spst Spst2g02184 Chr2 20862117 20880870 -
Ssu Ssu2g1041 Chr2 48751166 48768838 +
Vian Vian1g02854 Chr1 44910277 44928511 -
Vian Vian10g01847 Chr10 30309174 30319053 -
Vifa Vifa6g01976 Chr6 731338522 731354035 -
Vifa Vifa3g03808 Chr3 1116969735 1116988392 +
Vimu Vimu11g01549 Chr11 18620659 18634830 +
Vimu Vimu7g00421 Chr7 4601115 4609810 -
Viun Viun3g01979 Chr3 15623042 15643257 +
Viun Viun2g00050 Chr2 1211485 1220799 -
Vra Vra11g1307 Chr11 16025044 16036649 +
Adu Adu10g02947 Chr10 105672226 105673374 +
Lapu Lapu2g01791 Chr2 31576345 31590255 -
Mepo Mepo4g01290 Chr4 16585127 16595297 -
Pste Pste1g03749 Chr1 18358880 18369667 -
Pvu Pvu3g0083 Chr3 749580 758817 +
Rops Rops1g00322 Chr1 8526863 8537630 -
Seca Seca10g05276 Chr10 120465532 120479090 +
Spst Spst2g02184 Chr2 20862117 20880870 -
Vian Vian10g01847 Chr10 30309174 30319053 -
Vifa Vifa3g03808 Chr3 1116969735 1116988392 +
Vimu Vimu7g00421 Chr7 4601115 4609810 -
Viun Viun2g00050 Chr2 1211485 1220799 -