Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1287 ATGGCTGCGTCTTCATATTCTCCACCAATTGAAAATATTAGTCCCCTGCCTGATCAAAGTTCAAGTGGATCAAGAAAGGACATTGAAAATGAAAATGTTGTACAAGATGATGGAGATGAAGTACGGCCTCCATTACCGGTGATAAGGGAGGCTCTTTATGACGATGCTATGTTGTATGGAGTATCAAGAGGAGGATATCCTTCACATGAAGCAAGTTCTTTAGTTGCATTCCGTAATTTTGATGATGAGATGAAACGCCCAGGGATTTGGGAATCAGAAAAAGGTGCTACATCTACGGCAGAAAATTCTCGAGATAATCTTGCTTCGTTATATCGGCCTCCATTTGCTTTAATGCACCATGGACCTTTTGAAAAGGCAAAAGTTGCTGCTGCAGGTCAGGATAAATGGCTCCTGGTAAACTTGCAATCCACCACAGAATTCAGCTCACATATGCTTAATCGGGATACATGGGCAAATGAAGCTGTGGCGCAAACTATTAGTACAAATTTCATCTTCTGGCAGGTATATGATGATACAAGTGAGGGCAAGAAAGTCTGCACCTACTACAAATTGGATTCTATTCCTGTGGTTCTTGTGATTGACCCCATCACAGGCCAAAAGATGCGCTCATGGTGTGGAATGATTCAACCAGAGCGTTTGCTGGAGGATCTATTACCATTCATGGATGGTGGCCCCAAGGATCATCACGTCACTCTATCTCATAAACGTCCAAGAGAAAGCTCTCTGACTCCTCCCCAGAAAATTCAAGATGAAACTAATGAAGAAGATGAGGAAGTGCAATTGGCATTGGCAGCCTCTATGGCAAGCATGAAAGACCCTAGTGGATTGACTTCCAAGGAAAAAGATGTAACCACTACTGACAAGAAGGAAGAGATGTGTTCAGCTAAGAAGCCTGAATATCCTCCTCTGCCCGAAGAACCCAAGGGTGATAGGAACCTTCTTTGCAGGGTTGGAGTCCGTCTCCCAGATGGCCGCCGGATCCAGAGAAATTTCTTACGTACTGACCCAATACAGTTGCTTTGGTCGTTCTGCTATTCTCAACTTGAGGAAGTGGTTTCACGGCCGTTCCACTTGACCCAGGCAATACCAGGTGCTTCACAGAATCTGGACTATGATAGAGAATTAACCTTTGAAGAGTCAGGACTTGCAAACTCTATGATCTCGGTTACATGGGAATGA 1200 0.4408 MAASSYSPPIENISPLPDQSSSGSRKDIENENVVQDDGDEVRPPLPVIREALYDDAMLYGVSRGGYPSHEASSLVAFRNFDDEMKRPGIWESEKGATSTAENSRDNLASLYRPPFALMHHGPFEKAKVAAAGQDKWLLVNLQSTTEFSSHMLNRDTWANEAVAQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVIDPITGQKMRSWCGMIQPERLLEDLLPFMDGGPKDHHVTLSHKRPRESSLTPPQKIQDETNEEDEEVQLALAASMASMKDPSGLTSKEKDVTTTDKKEEMCSAKKPEYPPLPEEPKGDRNLLCRVGVRLPDGRRIQRNFLRTDPIQLLWSFCYSQLEEVVSRPFHLTQAIPGASQNLDYDRELTFEESGLANSMISVTWE* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1287 399 Gene3D - 316 397 - -
Vvi1g1287 399 CDD UBX 323 397 - -
Vvi1g1287 399 PANTHER FAS-ASSOCIATED PROTEIN 23 399 - -
Vvi1g1287 399 MobiDBLite consensus disorder prediction 29 43 - -
Vvi1g1287 399 SMART 45neu3 106 229 IPR006577 -
Vvi1g1287 399 Pfam Thioredoxin-like 123 202 - -
Vvi1g1287 399 SUPERFAMILY Thioredoxin-like 102 236 IPR036249 -
Vvi1g1287 399 Gene3D Glutaredoxin 120 231 - -
Vvi1g1287 399 SUPERFAMILY Ubiquitin-like 307 398 IPR029071 -
Vvi1g1287 399 CDD UAS 118 230 - -
Vvi1g1287 399 ProSiteProfiles UBX domain profile. 317 397 IPR001012 GO:0005515
Vvi1g1287 399 MobiDBLite consensus disorder prediction 232 315 - -
Vvi1g1287 399 Pfam UBX domain 322 373 IPR001012 GO:0005515
Vvi1g1287 399 MobiDBLite consensus disorder prediction 1 43 - -
Vvi1g1287 399 MobiDBLite consensus disorder prediction 1 28 - -
Vvi1g1287 399 MobiDBLite consensus disorder prediction 282 315 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1287 K24350 - vvi:100247740 797.734