Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu1g0491 . . . . Aev07g1418 . . . . . . . . . . . . Cca05g00704 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tsu01g01089 . Vifa3g04129 . . . .
Pvu1g0492 . . . . . . . . . . . . . . . . . . . . . . . . . Gso17g1814 . . . . . . . . . . . . . . . . . . . Phco2g00561 . . . . . . . . . . . . . . Vimu1g02647 . . .
Pvu1g0493 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0494 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0495 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0496 . . . Aed6g1175 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tsu01g01081 . . Vimu1g02641 . . .
Pvu1g0497 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tsu01g01080 . . . . . .
Pvu1g0498 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0499 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0500 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu1g0491 Chr1 5257704 5260367 -
Aev Aev07g1418 Chr07 13246923 13262085 +
Cca Cca05g00704 Chr05 18590824 18592825 -
Tsu Tsu01g01089 Chr01 10051710 10055263 -
Vifa Vifa3g04129 Chr3 1218433194 1218434105 +
Pvu Pvu1g0492 Chr1 5263481 5263831 -
Gso Gso17g1814 Chr17 36229595 36233196 -
Phco Phco2g00561 Chr2 5377983 5378624 -
Vimu Vimu1g02647 Chr1 38242166 38243938 +
Pvu Pvu1g0493 Chr1 5271176 5272075 -
Pvu Pvu1g0494 Chr1 5285060 5287671 -
Pvu Pvu1g0495 Chr1 5298347 5298987 -
Pvu Pvu1g0496 Chr1 5299137 5301240 -
Aed Aed6g1175 Chr6 16484991 16485775 -
Tsu Tsu01g01081 Chr01 9991589 10016336 -
Vimu Vimu1g02641 Chr1 38185709 38187906 +
Pvu Pvu1g0497 Chr1 5316958 5323429 -
Tsu Tsu01g01080 Chr01 9981199 9989927 -
Pvu Pvu1g0498 Chr1 5328973 5331999 -
Pvu Pvu1g0499 Chr1 5376702 5383434 +
Pvu Pvu1g0500 Chr1 5412446 5414243 -
Cca Cca05g00704 Chr05 18590824 18592825 -
Vifa Vifa3g04129 Chr3 1218433194 1218434105 +