Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1087 ATGGCACAACGTTCTCATGTACCCAAATTTGGCAATTGGGATAGTGGAGAGAATGTTCCTTATACAGCATATTTTGACAAGGCCCGGAAAGGCCGAACTGGTGCAAGAATAATAAATCCAAATGACCCTGAAGAAAATTCTGATTTAGGTCTTGACAATCCATCATCTGAGCAACTACCTCCATCCAAACCCAGAGTTAGTTCAGAGGATCCATCTGGAAAGGGATCACTGCCTTTGGAAGATGATCCTAAGCATTTCATTGACTCTCCAGCTCGTCATGACAATGTAAGCAATAGGACTAGCAGCAGAAGTCACGGAGTAACTTCTGCCGATAACCGTAGAAGACATTCTACGCAAAGTGTTGGGTCTGACCACAGCATTGAGCGTTCACCACTTCATCGCCAGGCCAGACCCCCTGGCAGAGACAGTCCCCAATGGGAACCAAAGAATTCATATGACAACATCCAGGGAACACCAGGGAGATCTCGGTTAAGACAGGCTAACAGGGGAGATGAAACACCAGATAAAGGTGCAGCTGTTCCTAAGTTTGGTGACTGGGATGTGAACAACCCAGCCTCAGCAGATGGCTTTACACACATTTTCAACAAAGTGAGGGAGGAGAGACAGGGAGGGCCGGCACAAGTTCCGGGCACGCCTAACGATAGACCACAACATAACAAGGGCCAATTCACTGATGACAAAGTCCAGTGTTGCTGCTTTGCCTGGGGCAAAAAATGA 738 0.4743 MAQRSHVPKFGNWDSGENVPYTAYFDKARKGRTGARIINPNDPEENSDLGLDNPSSEQLPPSKPRVSSEDPSGKGSLPLEDDPKHFIDSPARHDNVSNRTSSRSHGVTSADNRRRHSTQSVGSDHSIERSPLHRQARPPGRDSPQWEPKNSYDNIQGTPGRSRLRQANRGDETPDKGAAVPKFGDWDVNNPASADGFTHIFNKVREERQGGPAQVPGTPNDRPQHNKGQFTDDKVQCCCFAWGKK* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1087 245 MobiDBLite consensus disorder prediction 93 107 - -
Vra9g1087 245 MobiDBLite consensus disorder prediction 206 230 - -
Vra9g1087 245 MobiDBLite consensus disorder prediction 108 136 - -
Vra9g1087 245 PANTHER RIN4, PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR CLEAVAGE-RELATED 1 242 - -
Vra9g1087 245 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 1 242 IPR040387 -
Vra9g1087 245 MobiDBLite consensus disorder prediction 147 163 - -
Vra9g1087 245 MobiDBLite consensus disorder prediction 75 92 - -
Vra9g1087 245 MobiDBLite consensus disorder prediction 28 191 - -
Vra9g1087 245 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 3 32 IPR008700 -
Vra9g1087 245 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 174 209 IPR008700 -
Vra9g1087 245 MobiDBLite consensus disorder prediction 46 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1087 Vra-Chr9 13862293 13868322 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1087 K13456 - gmx:100499218 461.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0485 4 8687690 8694852 Vra9g1087 9 13862293 13868322 PCT