Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0485 ATGATGGAAACTAGCATCATCAATCAGCAAAATTTTCATGATCCAAAGCTTGGCAATCAGGAAAATGAAGAAAATGTCTCAGATACAGCTTATTCTGACAAAACCCAGAAAGGTCAACCTGGTTCGAAGATGATACATCCAAATGAGCCCGAGAAAAATTCATATCTAGTTTCTTCTGCTGACCTACCCCATTCAAAACCAAGAGTTCACTCAGAGGATCCATTTGGAAAGGGATCAGTGAGATCCACATATGAGTTACAAAAGAGCAGGGACGATGGTGATGCTAAACATTTCACTGAGTCTCCAGCTCGCCATGACAATGGTAGCCATGTGAGTGGCACTGATTCTGCCCAACGAGGCCAGGGAGTAGGTTCTGCTGACAACGGTAGAAAACCTTCAAGACAAACTATTGGATCTGAACACAACATTGACCGTTCACCCCTTCATCGCCAGGCAAAAGCCCCTGGCAGGGATAGTCCTTCTTGGGAAGTAAAGAATTCATATGGCACCAGCCATGTTACCCCAGGAAGGTCCCGGTTAAGACCATCTAACCGAGGGGATGAAACTCCTGATAAAGGTGCCGCTGTTCCAAAATTTGGTGAGTGGGACGAGAGCAACCCTGCATCAGCTGATGGCTATACTCATATTTTCAACAGAGTGCGGGAGGAGAAGCAGGTGGGGGCTGGACATGTCCCAGGCACACCTAATGCTAGACAATATGGTGTGCGGAATCAGCCTGCTGATGAGAAAGCTCAGAGTTGCTGCTTTTGCTGGGGAAAAAAATGA 786 0.4656 MMETSIINQQNFHDPKLGNQENEENVSDTAYSDKTQKGQPGSKMIHPNEPEKNSYLVSSADLPHSKPRVHSEDPFGKGSVRSTYELQKSRDDGDAKHFTESPARHDNGSHVSGTDSAQRGQGVGSADNGRKPSRQTIGSEHNIDRSPLHRQAKAPGRDSPSWEVKNSYGTSHVTPGRSRLRPSNRGDETPDKGAAVPKFGEWDESNPASADGYTHIFNRVREEKQVGAGHVPGTPNARQYGVRNQPADEKAQSCCFCWGKK* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0485 261 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 190 225 IPR008700 -
Vra4g0485 261 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 10 258 IPR040387 -
Vra4g0485 261 Coils Coil 261 261 - -
Vra4g0485 261 MobiDBLite consensus disorder prediction 181 198 - -
Vra4g0485 261 MobiDBLite consensus disorder prediction 1 42 - -
Vra4g0485 261 PANTHER RIN4, PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR CLEAVAGE-RELATED 10 258 - -
Vra4g0485 261 MobiDBLite consensus disorder prediction 84 104 - -
Vra4g0485 261 MobiDBLite consensus disorder prediction 225 245 - -
Vra4g0485 261 MobiDBLite consensus disorder prediction 105 142 - -
Vra4g0485 261 MobiDBLite consensus disorder prediction 1 210 - -
Vra4g0485 261 MobiDBLite consensus disorder prediction 163 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0485 Vra-Chr4 8687690 8694852 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0485 K13456 - gmx:100499220 412.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0485 4 8687690 8694852 Vra9g1087 9 13862293 13868322 PCT