Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0996 ATGAAAGGTGAGGTTTTGACTGAGAAGAGTGATGGTGTTGAAGGATACACAAAATGGGAAAATAGTTGCAATGATAAGAATATTGCTGATTTGGTTAAAGATAAAGGTAGAGAAAGCAGTTCCCGCTCTGAATTGCTGTCATCTGAGATGATAGAACTTGATGATCAGAATTCCACTTCATCAACTTCGATGGAGTGGCCTGTTCAAGAAATCTCTGAATCCAACTGTACCGGTCCACATGGAAGTGATGATGCAGAGAAAAAGAACACTGGTAGTGAGATTTCTGAGGAGCAGGATCCTGTATTACCAGTACCAGAGCTGGAGCTTGATATGATGAAGGAGAGGTTTGCAAAACTGTTACTTGGAGAAGATATGTCAGGTTCGGGTAATGGAGTCCCTACAGCGTTGGCTATATCCAATGCCATCACGAATCTATGTGCCACCCTCTTTGGCCAACTTTGGAAGTTGGAACCTTTGACATCAGAAAAGAAAGCAATGTGGCAAAGAGAGATGGAATGGCTTCTTTCTGTCAGTGATCATATTGTGGAATTGAAGCCTAGATGGCAAACATTTCCTGATGGAAGAAAGCTTGAGGTCATGTCTTGTAGACCTCGCTCAGATCTTTATGTCAATCTGCCAGCTCTACGAAAATTAGATAACATGCTTCTTGAAATACTAGATAGTTTTGTGAATCCAGAGTTCAGATATGTGGACCAAGGAGTTGTGGTCCCTGATACAGATGGTTCATCTTCTTTCCGCCAAGCGATTCAGCGACTAGAGGAGAAGTGGTGGCTTCCTGTACCTCAAGTCCCTCCTAGTGGTCTCCATGAAATTTCAAGAAAGCAGTTACAGCACAAGAGGGATTGCACAAACCAGATATTAAAAGCTGCAATGGCCATTAACAGCATTGCTTTAGCTGAAATGGAGATTCCTGATGCTTACTTGGAGTCTCTTCCGAAGACTGCAAGAACCAGCTTGGGGGATGTCATTTACAGGTATATTACAGCCGACAGTTTTTCTCCTGAGTGTTTGCTAGCTTGCCTTGATTTATCATCCGAACATCAAGCCATAGAGATTGCCAACAGAGTAGAGGCTTCCATTTATATCTGGCGTTTGAAGACCAACCCGAGGCCTACTGGTCGCACTACAAGAAATAATTCAAAATCATCGTGGGAAATTTTCAGGGATCTAATTGTTGAGGGAGACAAGAGCGCAACTCTTGCAGAAAAAGCAGAAAGTCTTTTGCTTTCCTTGAAGCAACGTTTCCCCAGTCTCCCTCAAACAACCTTAGATACGAGCAAAATCCAATGCAACAAGGATGTTGGGAAATCTATTCTGGAAAGCTACTCTCGAGTACTAGAGAGTTTAGCATCTAACATTGTTGCACGCATCGATGATGTGATCTATGTTGATGACTTGACTAAACATTCCGATTCATTCTCACTTCTCTCAAAAGTTGGTGTAATTGCACACAAGAGCATTTCAGTTCCATGCTCGAGGCCAGGCGAAAAACCATCTTTTGACAAACAAAGCTTTTCTCCTGCAAGATGTGTTAGCCCTGCAAAGGGAGCCAAATCATCATTCATCAACAGATGCAACCTTCCCCAAAGAGGAGTAGGTGTTAGTAAAGTTTTGACTGAGATGAAAGAAAAGAACTGTGTCTTCTGTCCAACGGAGATGTTTGTTCCAAGGTTAGAAACATTTGATGAAGTGCCAGCATTTGAAACAGAAATGGAGTCAAGTGATTGCACAGAAGATGCTAAGCTCAATGTATTGGACCGGGCATGGCTAGAGGGAAAGGATCTTAATTGA 1812 0.4244 MKGEVLTEKSDGVEGYTKWENSCNDKNIADLVKDKGRESSSRSELLSSEMIELDDQNSTSSTSMEWPVQEISESNCTGPHGSDDAEKKNTGSEISEEQDPVLPVPELELDMMKERFAKLLLGEDMSGSGNGVPTALAISNAITNLCATLFGQLWKLEPLTSEKKAMWQREMEWLLSVSDHIVELKPRWQTFPDGRKLEVMSCRPRSDLYVNLPALRKLDNMLLEILDSFVNPEFRYVDQGVVVPDTDGSSSFRQAIQRLEEKWWLPVPQVPPSGLHEISRKQLQHKRDCTNQILKAAMAINSIALAEMEIPDAYLESLPKTARTSLGDVIYRYITADSFSPECLLACLDLSSEHQAIEIANRVEASIYIWRLKTNPRPTGRTTRNNSKSSWEIFRDLIVEGDKSATLAEKAESLLLSLKQRFPSLPQTTLDTSKIQCNKDVGKSILESYSRVLESLASNIVARIDDVIYVDDLTKHSDSFSLLSKVGVIAHKSISVPCSRPGEKPSFDKQSFSPARCVSPAKGAKSSFINRCNLPQRGVGVSKVLTEMKEKNCVFCPTEMFVPRLETFDEVPAFETEMESSDCTEDAKLNVLDRAWLEGKDLN* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0996 603 PANTHER PRONE DOMAIN-CONTAINING PROTEIN-RELATED 3 598 - -
Vra9g0996 603 Gene3D PRONE domain, subdomain 1 342 480 - -
Vra9g0996 603 Gene3D PRONE domain, subdomain 1 104 341 - -
Vra9g0996 603 MobiDBLite consensus disorder prediction 1 20 - -
Vra9g0996 603 MobiDBLite consensus disorder prediction 43 79 - -
Vra9g0996 603 MobiDBLite consensus disorder prediction 1 15 - -
Vra9g0996 603 MobiDBLite consensus disorder prediction 27 100 - -
Vra9g0996 603 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 108 475 IPR005512 GO:0005085
Vra9g0996 603 MobiDBLite consensus disorder prediction 27 42 - -
Vra9g0996 603 MobiDBLite consensus disorder prediction 80 94 - -
Vra9g0996 603 ProSiteProfiles PRONE domain profile. 99 481 IPR005512 GO:0005085
Vra9g0996 603 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 3 598 IPR038937 GO:0005085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0996 Vra-Chr9 12225533 12228930 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0996 - - gmx:100788452 832.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0634 6 5836869 5840231 Vra9g0996 9 12225533 12228930 ECH
Vra9g0996 9 12225533 12228930 Vra9g0996 9 12225533 12228930 ECH