Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0664 ATGACAATGAGGATAAAGCAAAGTTTTTTGTGTTTTGTATGGATTTTGCTTTGTGGGTCTTGTTTGGGATCGTTTGTGGTGGAGAAGAACAATTTGAAAATCACTTCCCCAAATTCATTGAAAGGTATATATGAATGTGCAATTGGGAATTTTGGGGTCCCCAAGTATGGAGGAACCATGATTGGCTCAGTGGTGTACCCGAAGACCAATCAGAATGGATGTCAACCCTTTGATTCCTCGTTGAGTTCCAAGCCCGGAACCTTCCCCAGCTTTGTTCTTATTGATCGAGGAGAGTGCTACTTCACTTTAAAGGCGTGGAATGCACAGAAAGGTGGAGCGGCGGCCATTCTTGTTGCAGATGATAGGACAGAACCATTGATCACCATGGACACACCTGAAGAAGGAACTGGCTCCAGCAAAGACGATTATATTGAGAAGATCAACATTCCTTCTGCCCTTATCAGCAAATCACTAGGGGATAAAATCAAGAGTTCTCTCTCTAGTGGGGAAATGGTTAATGTGAATCTTGATTGGAGAGAGGCTCTTCCTCACCCTGATGAGAGAGTTGAGTATGAGTTTTGGACAAGTAGCAATGATGAGTGTGGACCAAAGTGTGAAAGTGAAATTAACTTTGTCAAGGGTTTTAAAGGGGCAGCTCAATTACTAGAGCAGAAAGGGTTTGCAAAGTTTACACCTCACTATATAACTTGGTATTGTCCAGAAGCATTTATATTGAGCGAACAGTGCAAGTCCCAGTGCATAAATAATGGAAGATACTGTGCACCAGATCCTGAGCTAGATTACAAAAGAGGGTATAGTGGTAAAGATGTTGTTATCCAAAACTTACGTCAAGTATGCTTCTTTAAAGTGGCAAATGAAAGTGGAAAGCCTTGGCAATGGTGGGACTATGTGACTGACTTTTCAATCCGCTGCCCAATGAGAGAGAATAAGTATACTGAAGAATGCTCAGACCAAGTTATTAAATCTCTTGGTATTGATTTGAAGAAAGTTAAAGATTGTGTCGGAGATCCTGATGCAAATGTCGACAACCCTGTTCTCAACAATGAACAGGATTCACAGATTGGTAACGGCGATCGTGGAGATGTTACTATACTACCTACTCTTATTATAAACAACAGGCAATATAGAGGTAAGCTATCAAAAGCAGCAGTACTCAAGGCAATATGTTCAGGCTTCCAAGAAACTACCGAGCCATCAATTTGCTTAACTCCAGACATGGAAACTAACGAGTGTTTGCAGAACAATGGTGGTTGTTGGCAGGACGCTGCTGCTAACATTACTGCGTGCAGGGACACTTTCAGAGGAAGAGTATGCGAATGCCCAGTTATACAAAATGTGCAGTTTGTTGGTGATGGATATACCCATTGTGAAGCTACAGGGGCCTTGAGGTGTGCAATCAACAACGGAGGTTGTTGGAAAGAAACCAGAGGTAGCACGACTTTCTCTGCTTGTATTGATGACCACACCAAAGGTTGCAAGTGTCCACCTGGATTCCAGGGAGATGGAGTCAACTCCTGTAAAGACCTGGATGAATGCAAGGAGAAATTGGCCTGCCAGTGCCCAGAATGTCAATGCAAAAATACTTGGGGAAGTTATGAATGCTCATGTACTGATGGTTTGTTCTACACGCGAGAAAATGATATGTGCATTGGAAAATATGCTGCTTCGGTGACCGGTGGGGGCATCGTTTGGATGGTTATTCTGATATTGGCTGTTGCTGGTGTCGGGGGGTATGCATTTTACAAGTACAGAATCCGGAGATACATGGACTCTGAGATAAGGGCAATTATGGCCCAATATATGCCCTTGGATAATCAACCGGAGACTTCTATTCAAACTCAAGGAGATGTCTAG 1875 0.4288 MTMRIKQSFLCFVWILLCGSCLGSFVVEKNNLKITSPNSLKGIYECAIGNFGVPKYGGTMIGSVVYPKTNQNGCQPFDSSLSSKPGTFPSFVLIDRGECYFTLKAWNAQKGGAAAILVADDRTEPLITMDTPEEGTGSSKDDYIEKINIPSALISKSLGDKIKSSLSSGEMVNVNLDWREALPHPDERVEYEFWTSSNDECGPKCESEINFVKGFKGAAQLLEQKGFAKFTPHYITWYCPEAFILSEQCKSQCINNGRYCAPDPELDYKRGYSGKDVVIQNLRQVCFFKVANESGKPWQWWDYVTDFSIRCPMRENKYTEECSDQVIKSLGIDLKKVKDCVGDPDANVDNPVLNNEQDSQIGNGDRGDVTILPTLIINNRQYRGKLSKAAVLKAICSGFQETTEPSICLTPDMETNECLQNNGGCWQDAAANITACRDTFRGRVCECPVIQNVQFVGDGYTHCEATGALRCAINNGGCWKETRGSTTFSACIDDHTKGCKCPPGFQGDGVNSCKDLDECKEKLACQCPECQCKNTWGSYECSCTDGLFYTRENDMCIGKYAASVTGGGIVWMVILILAVAGVGGYAFYKYRIRRYMDSEIRAIMAQYMPLDNQPETSIQTQGDV* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0664 624 Pfam PA domain 62 162 IPR003137 -
Vra9g0664 624 Gene3D - 23 185 - -
Vra9g0664 624 SMART egfca_6 515 557 IPR001881 GO:0005509
Vra9g0664 624 PANTHER VACUOLAR-SORTING RECEPTOR 1 11 604 - -
Vra9g0664 624 ProSitePatterns Calcium-binding EGF-like domain signature. 515 541 IPR018097 GO:0005509
Vra9g0664 624 Gene3D Laminin 470 557 - -
Vra9g0664 624 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 11 604 - -
Vra9g0664 624 SUPERFAMILY PA domain 91 171 IPR046450 -
Vra9g0664 624 CDD EGF_CA 515 546 - -
Vra9g0664 624 Gene3D Laminin 409 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0664 Vra-Chr9 7562769 7568960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0664 5 624 Miscellaneous Gene Families AT3G52850 68.800 0.0 923
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0664 - - gmx:100815266 1203.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0633 4 11850454 11856113 Vra9g0664 9 7562769 7568960 PCT