Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0633 ATGGGCACAAAACTGAGTCTTTTGTTGTGTGTTTTGGGTTTGTTATTGGGGTGTACTGTGGGTAGGTTTGTTGTGGAGAAGAACAGTTTGAGAGTGACTGCTCCCTCATCGTTAAAGGGGACATATGAATGTGCAATTGGAAATTTTGGGGTCCCCATGTATGGAGGAACATTGGTTGGCTCTGTGCTATACCCAAAGGTGAATCAGAAGGGGTGCCTCAACTTCACTGATGTCAATTTTCAGTCCAAACCAGGAGGGTTCCCCACCTTTCTACTTGTGGATCGTGGAGATTGCTACTTCACTTTGAAGGCATGGAATGCACAGAATGGTGGAGCAGCAGCTATTCTTGTGGCTGATGACAAGGCAGAAACATTGATCACTATGGACACTCCCGAAGAAGGGAAAGGTACAGATGATGATTACGTGGAAAATATTAGTATACCTTCTGTTCTTATCAGCAAATCCTTGGGGGATAGCATAAAAAAAGCTCTCTCTGATGGAGAAATGGTTAACATGAATCTTGATTGGAGAGAGGCTCTTCCACATCCTGATGATAGAGTTGAGTATGAGTTATGGACAAATAGCAACGACGAGTGTGGACAAAAGTGTGACAGTCTAATTAATTTTCTGAAGGACTTTAAAGGGGTTGCTCAGCTGCTTGAGCGGAAAGGATTCACTCAGTTTACCCCTCGCTATATAACTTGGTTTTGTCCTGAAGCATTTCTCTTGAGCAAACAGTGCAAGTCTCAATGCATAAACAATGGAAGGTACTGTGCTCCAGATCCCGAGCAAGATTTCAGTAGTGGGTATGATGGCAAAGATGTTGTTGTTCAAAACTTACGCCAAGCTTGCTTCTATAAAGTGGCAAATGAAAGTGGAAAGCCTTGGCAGTGGTGGGACTATGTTACCGACTTTTCAATTCGTTGCCCCATGAAAGAGAAGAAGTACACAGAAGAATGCTCAGATCAAGTTATTAAATCTCTTGGTGCTGATCTGAAGAAGATTAAGGACTGTATTGGGGATCCCCGTGCAGATGTTGAAAATCCTGTTCTTAAGGCTGAGCAGGAGGCACAGATTGGCAAAGGTACTCGTGGTGATGTGACTATACTGCCTACTCTTGTTATAAACAGCAGACAGTATAGAGGTAAGCTGTCAAGACCCGCTGTTCTCAAGGCAATCTGTGCAGGTTTCCTAGAGACCACTGAACCATCCGTTTGCTTAACTCCAGAAATGGAAACAGATGAGTGTTTGGTAAACAATGGTGGTTGTTGGAAGGAAAAATCCTCTAACATTACTGCTTGCCGGGACACTTTCCGAGGAAGAGTATGTGAATGCCCTGTTGTACAAAATGTGAAATTTGTTGGAGATGGATATACCCACTGTGAAGCATCTGGAACCTTGAGCTGTGACTTCAACAATGGTGGTTGTTGGAAGGGATCTCAAGGTGGCAGGGCTTACACGGCTTGTCTGGATGACTACAGAAAAGGCTGTACATGTCCTCCTGGATTCAGAGGCGATGGAGTCCAGTCATGTGAAGATATTGATGAGTGCCAAGAGAAAACAGCCTGCCAATGCCCAGCTTGCACATGCAAAAACACCTGGGGAAGTTATGAATGCAAATGTGGTAGTGGTTTGTTCTACTCACGAGAAAATGACACATGTCTAGGTGCATATTCTGCTACAGGGGTGAGCATATGGATGATTATCCTCATTGCGGTAGTTGCTGTTTCTGGAGGATATGCATTTTACAAGTACAGAATCCAGAGATATATGGATTCAGAAATACGGGCAATTATGGCACAGTACATGCCTTTGGATAATCAACCTGAGGAATCTAATCAAGTTCATCATAATATCTAA 1860 0.4349 MGTKLSLLLCVLGLLLGCTVGRFVVEKNSLRVTAPSSLKGTYECAIGNFGVPMYGGTLVGSVLYPKVNQKGCLNFTDVNFQSKPGGFPTFLLVDRGDCYFTLKAWNAQNGGAAAILVADDKAETLITMDTPEEGKGTDDDYVENISIPSVLISKSLGDSIKKALSDGEMVNMNLDWREALPHPDDRVEYELWTNSNDECGQKCDSLINFLKDFKGVAQLLERKGFTQFTPRYITWFCPEAFLLSKQCKSQCINNGRYCAPDPEQDFSSGYDGKDVVVQNLRQACFYKVANESGKPWQWWDYVTDFSIRCPMKEKKYTEECSDQVIKSLGADLKKIKDCIGDPRADVENPVLKAEQEAQIGKGTRGDVTILPTLVINSRQYRGKLSRPAVLKAICAGFLETTEPSVCLTPEMETDECLVNNGGCWKEKSSNITACRDTFRGRVCECPVVQNVKFVGDGYTHCEASGTLSCDFNNGGCWKGSQGGRAYTACLDDYRKGCTCPPGFRGDGVQSCEDIDECQEKTACQCPACTCKNTWGSYECKCGSGLFYSRENDTCLGAYSATGVSIWMIILIAVVAVSGGYAFYKYRIQRYMDSEIRAIMAQYMPLDNQPEESNQVHHNI* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0633 619 Pfam PA domain 61 160 IPR003137 -
Vra4g0633 619 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 13 598 - -
Vra4g0633 619 Gene3D Laminin 407 452 - -
Vra4g0633 619 Gene3D Laminin 467 551 - -
Vra4g0633 619 SMART egfca_6 513 555 IPR001881 GO:0005509
Vra4g0633 619 PANTHER EGF-LIKE CALCIUM-BINDING DOMAIN, PA DOMAIN, THIOREDOXIN-LIKE PROTEIN-RELATED 13 598 - -
Vra4g0633 619 Gene3D - 20 183 - -
Vra4g0633 619 SUPERFAMILY EGF/Laminin 510 555 - -
Vra4g0633 619 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Vra4g0633 619 CDD EGF_CA 513 544 - -
Vra4g0633 619 ProSitePatterns Calcium-binding EGF-like domain signature. 513 539 IPR018097 GO:0005509
Vra4g0633 619 Pfam Complement Clr-like EGF-like 497 516 IPR026823 -
Vra4g0633 619 SUPERFAMILY PA domain 91 169 IPR046450 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0633 Vra-Chr4 11850454 11856113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0633 4 619 Miscellaneous Gene Families AT3G52850 70.465 0.0 922
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0633 - - gmx:100807514 1181.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0633 4 11850454 11856113 Vra4g0633 4 11850454 11856113 ECH
Vra4g0633 4 11850454 11856113 Vra9g0664 9 7562769 7568960 PCT