Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0658 ATGGAAACACACGTGAGATTTGGATTACGTACAATTTCCTTGGTCCTTTTTCTGACTCTTACTACAAGTTTAAGCTCAACTGCATTTGATGTCAGTGAATATGAAGATAGGGAAAGCGTTGATATAGCAGATTCTATCTTAAGTTATGGAAATGAAATGGAAGACATGGAAGAAAATGAATGGCAGATGGTGCAAACTAAAGCAAACCAATTTGTGGTGAACGACCAACCTTTCTATGTCAATGGATTCAACACGTACTGGTTGATGGTATTTGCTGCGGATGAGTCCACCAGAGGAAAGGTCACTGAGGTGTTCAAACATGCATCCTCTGTGGGTATGACAGTTTGTAGGACTTGGGCCTTCAATGATGGCCAATGGCGTGCTCTTCAGAAATCTCCATCAGTTTATGATGAAGACGTGTTCAAGGCCTTGGATTTCGTGGTGAGTGAAGCAAAGAAATACAAAATAAGGCTCATATTATCACTGGTTAACAACTGGGAGGCTTACGGGGGCAAAGCACAGTATGTAAAGTGGGGCAATGCAGCTGGCCTCAACCTGACCTCTGATGATGCCTTTTTTTCACATCCAACTCTCAGAAGCTATTACAAGGCTCATGTTAAGACTGTGCTCAATAGAGTTAATACATTCACAAATATCACTTACAAGGAAGATCCAACCATTTTTGCTTGGGAACTGATGAATGAGCCTCGGTGCAACTCAGACTCCACAGGTGATGTGTTACAGGATTGGATAAAAGAAATGGCATTCTATGTGAAAAGCATTGATACAAAACATCTGGTGGAGATTGGACTGGAAGGATTTTATGGCCCCTCGACACCTCAGAGATATCAGTTAAACCCAAATGCATATGCTCACCAGGTCGGAACAGATTTTATCAGGAACCACCAGGTTCTAGGTGTTGACTTCGCTTCTGTTCACATATATCCAGACTCTTGGATTTCACAATCAATTGCTGATTCCCACCTCCCATTTATAAAGTCTTGGATGGAAGCGCACATAGAGGATGCTGAAAAGTATCTCGGAATGCCTGTTGTTTTTAGTGAGTTTGGTGTGTCTGCAAAAGCTCCTGGCTTCAATTCATCATACAGAGACAACCTTATAAACACTGTGTACAAGACAATCCTAAACTCTACCAAGAAAGGAGGCAGTGGAGCTGGAAGCCTTGTGTGGCAGCTCTTTCCTGATGGAACGGATTACATGGATGATGGGTATGCAATTGTTCTCTCAAAATCACCTTCCACATCAAGCATTATATCCCTTCAATCCACAAGGCTAGCCCTCTTCAATTCCTTGTGCTCTACAAAATGCCGTTGGGGTTGTAAGAAGCGAAATGTGTTGGAAACAGTACTCTATCATGACGAACTCTAA 1389 0.4226 METHVRFGLRTISLVLFLTLTTSLSSTAFDVSEYEDRESVDIADSILSYGNEMEDMEENEWQMVQTKANQFVVNDQPFYVNGFNTYWLMVFAADESTRGKVTEVFKHASSVGMTVCRTWAFNDGQWRALQKSPSVYDEDVFKALDFVVSEAKKYKIRLILSLVNNWEAYGGKAQYVKWGNAAGLNLTSDDAFFSHPTLRSYYKAHVKTVLNRVNTFTNITYKEDPTIFAWELMNEPRCNSDSTGDVLQDWIKEMAFYVKSIDTKHLVEIGLEGFYGPSTPQRYQLNPNAYAHQVGTDFIRNHQVLGVDFASVHIYPDSWISQSIADSHLPFIKSWMEAHIEDAEKYLGMPVVFSEFGVSAKAPGFNSSYRDNLINTVYKTILNSTKKGGSGAGSLVWQLFPDGTDYMDDGYAIVLSKSPSTSSIISLQSTRLALFNSLCSTKCRWGCKKRNVLETVLYHDEL* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0658 462 PANTHER - 11 462 IPR045053 GO:0004553
Vra9g0658 462 SUPERFAMILY (Trans)glycosidases 65 421 IPR017853 -
Vra9g0658 462 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE 11 462 - -
Vra9g0658 462 Pfam Cellulase (glycosyl hydrolase family 5) 75 376 IPR001547 GO:0004553|GO:0071704
Vra9g0658 462 Gene3D Glycosidases 61 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0658 Vra-Chr9 7525229 7528635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0658 54 462 Glycoside Hydrolase AT5G01930 74.453 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0658 K19355 - gmx:100801139 838.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0625 4 11720729 11726303 Vra9g0658 9 7525229 7528635 PCT