Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0625 ATGGAGATATTTGGTGTTCGCATTATTTCTTTGGTACTTTTCTTGATGCTTACTAAAAACTTAAGTTGCAATGCTTTTGGTGGGAGTATGATGGATGAGGAATCACTCAAGGAAGGCCAAAATGACACGGGAAATTCTGTCTCAAATTATGGTGAAATGAGGGGCGTGGAAGATGATGATTGGCAGATGGTGCAAAAGAAGGGAAACCAATTTGTGGTGAATGACAAACCTTTCTATGTGAATGGATTCAACACATATTGGCTTATGGTATTTGCTGCAGACGAGTCCACCAGAGGAAAGGTCACTGAGGTGTTCAAGCAGGCATCCTCAGTGGGTATGACAGTTTGTAGGACGTGGGCCTTCAATTACGACCAATGGAGGGCCCTACAGAAATCTCCATCAGTTTATGATGAAGAAGTCTTCAAGGCCCTGGACTTTGTGGTGAGTGAAGCAAAGAAATACAAAATCAGGCTTATATTATCATTGTCTAACAACTGGGAGGTATATGGAGGCAAAGCACAATATGTGAAATGGGGAAACGCTGCTGGCCTTAACTTGACCTCTGATGATGACTTCTTCTCACATCCAACTCTTAGAAGCTACTACAAGGCCCATGTTAAGACTGTGCTCAAAAGAGTTAACACATTCACAAATATCACATACAAGGAGGATCCAACAATTTTTGCTTGGGAATTGATGAATGAGCCTCGTTGCACCTCAGATCCCACAGGTGACAAGTTACAGGATTGGATTGAAGAAATGGCATTCCAATTGAAGAAAATTGATCCAAAACACCTAGTAGAGGTTGGACTAGAAGGATTTTATGGTCCATCAACACCTCAGAGAACTCAGTTCAATCCCAATACATATGCTACACAGGTTGGAACTGATTTTATAAGGAATCACCTGGCTCTTGGTGTGGACTTCGCTTCTGTTCATATATATCCTGAGTATTGGATTTCACAACAAATTGCTGATTCTCATCTCTCATTTGTAAAATCATGGATGGAAGCCCACATAGATGATGCTGAAAAGCATCTTGGAATGCCAGTTGTTTTTGCTGAGTTTGGTGTATCTTCCAAAGACCCTGGCTACAATTCATCATACAGAGATACACTCATAAGTAGTGTGTACAATACCATCCTAAACTCCACAAAGAAAGGAGGGAGTGGGGCTGGAAGCCTTTTGTGGCAATTTTTTCCTGATGGAACTGATAACATGGATGATGGCTATGCAATTGTTCTCTCAAAATCTCCCTCCACCGCAAACATTATACAGCTTCAATCCACTAGGCTTGCGATGTTCAATTCCATGTGCAATACTAAATGCAATTGGGGATGTAAGAAAAACTTGTTGAACAACATACTCAATTACGTTGACCTATAA 1386 0.4098 MEIFGVRIISLVLFLMLTKNLSCNAFGGSMMDEESLKEGQNDTGNSVSNYGEMRGVEDDDWQMVQKKGNQFVVNDKPFYVNGFNTYWLMVFAADESTRGKVTEVFKQASSVGMTVCRTWAFNYDQWRALQKSPSVYDEEVFKALDFVVSEAKKYKIRLILSLSNNWEVYGGKAQYVKWGNAAGLNLTSDDDFFSHPTLRSYYKAHVKTVLKRVNTFTNITYKEDPTIFAWELMNEPRCTSDPTGDKLQDWIEEMAFQLKKIDPKHLVEVGLEGFYGPSTPQRTQFNPNTYATQVGTDFIRNHLALGVDFASVHIYPEYWISQQIADSHLSFVKSWMEAHIDDAEKHLGMPVVFAEFGVSSKDPGYNSSYRDTLISSVYNTILNSTKKGGSGAGSLLWQFFPDGTDNMDDGYAIVLSKSPSTANIIQLQSTRLAMFNSMCNTKCNWGCKKNLLNNILNYVDL* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0625 461 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE 8 457 - -
Vra4g0625 461 SUPERFAMILY (Trans)glycosidases 63 416 IPR017853 -
Vra4g0625 461 PANTHER - 8 457 IPR045053 GO:0004553
Vra4g0625 461 Pfam Cellulase (glycosyl hydrolase family 5) 74 373 IPR001547 GO:0004553|GO:0071704
Vra4g0625 461 Gene3D Glycosidases 61 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0625 Vra-Chr4 11720729 11726303 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0625 4 449 Glycoside Hydrolase AT5G01930 65.101 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0625 K19355 - gmx:100811794 850.892
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0625 4 11720729 11726303 Vra4g0625 4 11720729 11726303 ECH
Vra4g0625 4 11720729 11726303 Vra9g0658 9 7525229 7528635 PCT