Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0565 ATGTCAGAAACTGACTTGGCAGTTATTAAACCCGAGATGATGAAGCCTTATGTCTGGCTTCAGACTTCAGATGATTCGATCCAACAAGTGGAACAAGAAATTGCAATGTTTTGTCCACTTATATGTCAAGAAATAATACAAAAAGGCATGGGATCTTCCAAGAACTGTGCAATATGTCTTCCTCAACAAGTCAGTCCTGCCATGTTGAGCTTAATTCTTGATTATTGTCGTTTTCATCAAGTACCAGGCCGGTCAAACAAGGAACGTAAATCTTATGATGAGAAATTTGTTAGGATAGACACAGAGAGGCTTTGTGAGTTGACATCTGCTGCAGACAGCCTTCAGTTAAAACCGTTAGTCGATCTAACCAGCCGTGCACTTGCTCGAATAATTGAAGGGAAGACGCCAGAGGAGATACGTGATATATTTCATTTGCCAGATGATCTTACAGAGGAAGAAAAGCTGGAGCCATTGAGAAATATAACTGCTGACCCAAGGATCAGGCTTTTGAACCGTTTGTATGCAAAAAAGAGAAAAGAACTAAAAGAGCGTGAAAGGTTAAAGAATGTTGAGGTTGAAGAAGAACATGTAGATGATCGTTCAGTTGATGACTTGTTGTCCTTTATCAACGGAAATGATGGAGATCCAAAGGGAGTTAAAACTTCAAAGAATAAAAAGAAGAATAGGAGGAAAAAAGAGCAACAGAAGAATTCTTCTTTGAAGGAGGCATCTGAACTGAACAAGAAGGAGGTAAATGGTCATGATATCAGACACCAAAGTTCTGAAGCTGAGATAATTAGTGAGACCTCGTATTTACACTGTGCAGAAGATGATGGTTTTACTTCTAAGCCTGAGTTTGATGATGATGAGATTGATCCCGCTTTAAAGGAAAAAATTGACAGGGAAGTGGAAGATTTTGCCCGCAGATTAAATTCTGACTGGCCAGAAAGAATGCAAGAACTTTTATCATCAGGGCAAGAACGGAAGACGGTGTTTTTCACTGCAGATGGTTTTATAAGGCGACATGCTTGA 1032 0.3953 MSETDLAVIKPEMMKPYVWLQTSDDSIQQVEQEIAMFCPLICQEIIQKGMGSSKNCAICLPQQVSPAMLSLILDYCRFHQVPGRSNKERKSYDEKFVRIDTERLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRDIFHLPDDLTEEEKLEPLRNITADPRIRLLNRLYAKKRKELKERERLKNVEVEEEHVDDRSVDDLLSFINGNDGDPKGVKTSKNKKKNRRKKEQQKNSSLKEASELNKKEVNGHDIRHQSSEAEIISETSYLHCAEDDGFTSKPEFDDDEIDPALKEKIDREVEDFARRLNSDWPERMQELLSSGQERKTVFFTADGFIRRHA* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0565 343 SUPERFAMILY Skp1 dimerisation domain-like 90 159 IPR036296 GO:0006511
Vra9g0565 343 Coils Coil 223 249 - -
Vra9g0565 343 Coils Coil 170 190 - -
Vra9g0565 343 Pfam Skp1 family, dimerisation domain 117 154 IPR016072 GO:0006511
Vra9g0565 343 Gene3D Potassium Channel Kv1.1; Chain A 12 161 IPR011333 -
Vra9g0565 343 Pfam Skp1 family, tetramerisation domain 18 80 IPR016073 GO:0006511
Vra9g0565 343 PANTHER SKP1 1 278 IPR016897 GO:0006511
Vra9g0565 343 MobiDBLite consensus disorder prediction 205 255 - -
Vra9g0565 343 SUPERFAMILY POZ domain 16 80 IPR011333 -
Vra9g0565 343 MobiDBLite consensus disorder prediction 235 255 - -
Vra9g0565 343 SMART skp1_3 15 116 IPR001232 GO:0006511
Vra9g0565 343 PANTHER SKP1-LIKE PROTEIN 20 1 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0565 Vra-Chr9 6294133 6303725 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0565 - - gmx:100794666 607.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0565 9 6294133 6303725 Vra9g0565 9 6294133 6303725 ECH
Vra9g0565 9 6294133 6303725 Vra4g0777 4 14573089 14579769 ECH
Vra4g0777 4 14573089 14579769 Vra9g0565 9 6294133 6303725 PCT