Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0777 ATGTCGGAAATTGACATGGCGGTTATTAAACCAGAGATGATGAAGCCTTATATCTGGCTTGAGACATCAGATGGTTCAATCCAGCAAGTGGAACAAGAAATTGCAATGTATTGCCCTTTAATTTGTAAAGAAATAATACAAAAAGGGATGGGATCTTCCAAGAATTGTGCAATATGTCTTCCTCAACGAGTCAGTCCTGCAACATTGAGCTTAATTCTTGATTATTGTCGTTTTCATCAAGTACCAGGTCGCTCAAACAAGGAAAGGAAGTCTTATGATGAAAAGTTTGTTAGGATGGACACAAAGCGGCTGTGTGAGTTGACATCTGCTGCAGACAGCCTTCAGTTGAAGCCATTGGTTGATCTTACAAGTCGTGCACTTGCCCGGATAATTGAAGGAAAATCTCCAGAGGAGATACGTGAAATATTTCATCTGCCTGATGATCTAACTGAGGAAGAGAAGTTGGAGCCCTTGAAAAACACAACTGATGACCCAAGGATCAGGCTTTTGAATAGATTGTATGCCAAGAAGAGGAAAGAACTAAAAGAGCGCGAGAGGTTGAAGAGTGTTGAAGTTGAAGAAGAGCATATAGATAAACGTTCCGTTGATGATCTCTTGTCTTTTATTAATGGAAATGATGAAGATCAAAAGGGCATTAAAACTTCTAAGAATAAAAAGAAAAATAGAAGGAAAAAAGAGCAACATCAGAAGAACTCTTCTCTGAAGGAAGCTTCTGGAGTGAATAAGAAGGAAGTAAATGGTCAAAACATCAGACATCCAGATTCTGAAGCTGATATAATTGCTGAGACTTCAATTTCACATACAGAAGATGTTTTTCCTCATAAGGAGTTTGATGATGGAGATATAGATGATGGGATTGATCCTGCACTGAAGGAAAAAATTGACAGGGAAGTCGAAGATTTTGCCCGACGATTGAATTCTGACTGGCCAGAGAGGATGCAAGAACTTTTATCGTCTGGACAAGAAAGGAAGACGAGACTTTATAGTCCCAATGGAAATAGTTTTCTACGGCGAAATGCTTGA 1044 0.3908 MSEIDMAVIKPEMMKPYIWLETSDGSIQQVEQEIAMYCPLICKEIIQKGMGSSKNCAICLPQRVSPATLSLILDYCRFHQVPGRSNKERKSYDEKFVRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKSPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKERERLKSVEVEEEHIDKRSVDDLLSFINGNDEDQKGIKTSKNKKKNRRKKEQHQKNSSLKEASGVNKKEVNGQNIRHPDSEADIIAETSISHTEDVFPHKEFDDGDIDDGIDPALKEKIDREVEDFARRLNSDWPERMQELLSSGQERKTRLYSPNGNSFLRRNA* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0777 347 Pfam Skp1 family, tetramerisation domain 17 80 IPR016073 GO:0006511
Vra4g0777 347 Gene3D Potassium Channel Kv1.1; Chain A 12 162 IPR011333 -
Vra4g0777 347 PANTHER SKP1 1 279 IPR016897 GO:0006511
Vra4g0777 347 PANTHER SKP1-LIKE PROTEIN 20 1 279 - -
Vra4g0777 347 Coils Coil 224 244 - -
Vra4g0777 347 SUPERFAMILY POZ domain 16 80 IPR011333 -
Vra4g0777 347 SMART skp1_3 15 116 IPR001232 GO:0006511
Vra4g0777 347 SUPERFAMILY Skp1 dimerisation domain-like 90 160 IPR036296 GO:0006511
Vra4g0777 347 MobiDBLite consensus disorder prediction 327 347 - -
Vra4g0777 347 Pfam Skp1 family, dimerisation domain 117 154 IPR016072 GO:0006511
Vra4g0777 347 MobiDBLite consensus disorder prediction 323 347 - -
Vra4g0777 347 MobiDBLite consensus disorder prediction 210 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0777 Vra-Chr4 14573089 14579769 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0777 - - gmx:100809439 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0777 4 14573089 14579769 Vra4g0777 4 14573089 14579769 ECH
Vra9g0565 9 6294133 6303725 Vra4g0777 4 14573089 14579769 ECH
Vra4g0777 4 14573089 14579769 Vra9g0565 9 6294133 6303725 PCT