Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0563 ATGACTATGAGTGGCTTAATCTCAAATCGCAACTTCGGTTCCTTCGTTGGATCAGGAAATGGATATAGATCGGGGAGGGATATATCCGTTCAAAGACGGGGTGTTTCTATTTCTGGTGTATCTGTTGCACAGGATCCCTTTTCAAGACGGCAGCATAACATGCATTTGCGGTTGGAAGAGAGAATTAGGAAACCAATGCGAAAATCTCACTACAAAGGGGAACATTGTTCTCTTGTATCTCGGCAGTCTAGTCCGTGCTTAAACTTTAAATTACAGGCTAGCGGAATAAATGGTTGTTCCTTCGTTTCGTCTGCTCCTTATAGAAGTAACAATGTTGAACAAAGGGAAGTGCATGGTCTTGGTTTGAGCAGAAGGAAGCATGCACAACCTAAGGTTGCAAAAGCAAATAAATTCCGTGTTAGTTACAAGTCCGAGGAATATAACATTTCAGAAACAAAGATAGATCCACTACAATCAACTGAAGGGACTGGGGAAGCCATTCTTCTGGAAGGAAATCTGCAGCAAGTATCACCTTGGTGGCAGCAGTTTCCTAAGCGCTGGGTTATTGTACTGCTGTGTTTTTCAGCTTTTTTGCTGTGTAACATGGATCGGGTAAATATGAGCATAGCAATACTACCGATGTCTCAAGAATTCAACTGGAACAGTGCAACAGTTGGCCTAATTCAGTCATCCTTTTTCTGGGGCTATCTACTTACTCAGATTGTTGGTGGAATATGGGCAGACAAAATTGGTGGGAAGCTAGTACTAGGTTTTGGAGTTGTCTGGTGGTCAATTGCAACAGTTTTAACACCTATTGCTGCAAAACTTGGGTTACCATTTCTTCTTATAATGCGTGCCTTTATGGGAATTGGCGAGGGTGTTGCAATGCCCGCAATGAATAATATACTTTCCAAATGGATTCCAGTATCAGAGAGAAGCAGATCACTTGCGCTAGTATATAGTGGCATGTACCTTGGTTCTGTCACAGGCTTGGCATTCTCACCTATGCTAATCCAGAAATTTGGGTGGCCATCGGTGTTTTACTCATTTGGATCCCTAGGAAGTATCTGGTTTGTTTTATGGTTGAGTAAAGCATACAGCTCACCAAAAGAAGACCCAGATCTTGGGGTAGAAGAGAAGAAGCTCATACTTGGAGGCAATGTATCAAAAGAACCTGTATCAGTTATTCCTTGGAAATTAATTTTATCAAAAGCACCTGTTTGGGCTTTAATAATCTCTCACTTCTGCCACAACTGGGGGACATTTATTCTATTAACCTGGATGCCTACATACTACAATCAGGTTCTGAAGTTCAATCTCACTGAATCTGGGCTATTTTGTGTCCTGCCATGGTTAACCATGGCTATTTTTGCAAATATAGGAGGCTGGATTGCTGATACACTTGTGAGCAAAGGCCTTTCCATAACATCCGTTCGAAAGATTATGCAATCAGTTGGGTTTCTAGGTCCTGCATTTTTTCTTACGCAGCTAAGTCATGTGAGAACACCCGCCATGGCAGTACTTTGCATGGCTTGCAGTCAGGGATCCGATGCATTCTCACAGTCTGGCCTGTATTCCAATCATCAAGACATTGGACCACGCTATGCTGGAGTATTGCTGGGACTATCAAATACTGCAGGAGTGCTAGCTGGTGTCTTTGGTACAGCTGCAACTGGATACATACTCCAAAGAGGATCTTGGGATGATGTATTTAAGGTTGCTGTCGTATTGTACATAATTGGCACATTAGTCTGGAATATCTTTTCAACTGGAGAGAAAATTCTTGACTGA 1791 0.4227 MTMSGLISNRNFGSFVGSGNGYRSGRDISVQRRGVSISGVSVAQDPFSRRQHNMHLRLEERIRKPMRKSHYKGEHCSLVSRQSSPCLNFKLQASGINGCSFVSSAPYRSNNVEQREVHGLGLSRRKHAQPKVAKANKFRVSYKSEEYNISETKIDPLQSTEGTGEAILLEGNLQQVSPWWQQFPKRWVIVLLCFSAFLLCNMDRVNMSIAILPMSQEFNWNSATVGLIQSSFFWGYLLTQIVGGIWADKIGGKLVLGFGVVWWSIATVLTPIAAKLGLPFLLIMRAFMGIGEGVAMPAMNNILSKWIPVSERSRSLALVYSGMYLGSVTGLAFSPMLIQKFGWPSVFYSFGSLGSIWFVLWLSKAYSSPKEDPDLGVEEKKLILGGNVSKEPVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAIFANIGGWIADTLVSKGLSITSVRKIMQSVGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNIFSTGEKILD* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0563 596 CDD MFS_SLC17A9_like 190 589 IPR044777 -
Vra9g0563 596 SUPERFAMILY MFS general substrate transporter 176 588 IPR036259 -
Vra9g0563 596 ProSiteProfiles Major facilitator superfamily (MFS) profile. 189 593 IPR020846 GO:0022857
Vra9g0563 596 Pfam Major Facilitator Superfamily 193 554 IPR011701 GO:0022857|GO:0055085
Vra9g0563 596 PANTHER ASCORBATE TRANSPORTER, CHLOROPLASTIC 59 596 - -
Vra9g0563 596 PANTHER SOLUTE CARRIER FAMILY 17 59 596 - -
Vra9g0563 596 Gene3D MFS general substrate transporter like domains 394 594 IPR036259 -
Vra9g0563 596 Gene3D MFS general substrate transporter like domains 184 373 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0563 Vra-Chr9 6251240 6258213 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0563 1 596 Organic Solute Cotransporters AT4G00370 73.244 0.0 849
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0563 K08193 - gmx:100782221 1081.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0563 9 6251240 6258213 Vra9g0563 9 6251240 6258213 ECH
Vra4g0779 4 14588624 14594838 Vra9g0563 9 6251240 6258213 PCT