Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0334 ATGGCCCTTACAAAACAAATCATGGGTTCTTCATTGCTAGAGAGGTCCTTGTTTGTTCCTTCTTCTCCTTCATCACTTTTCAATCAAACTCGTTTCTTGGTTCCTCTGGAGAGCAAGAGAGTTGTGAGGGTAAGGAAGGCTGCAAAGTTTCCTGTGGCAACTATAAGTGAAGATTTGATCAAGGGTTCTTCTTCTTCTTCTTCACTATCATCTTCTTCCACTTCTTTAGTGTCTACAGAGAAGCCAGTGAAATTCAAGGTTAGAGCTGTTATCACAGTGAGGAACAAGATCAAAGAGGATTTGAAAGAGACCATTGTGAAGCATATTGATGCTCTGGCTGACAAGATTGGAAGGAATGTTGTCCTTGAACTTGTTAGCACCGAGATTGATCCAAAGACCAAAGCTGCAAAGAAGAGTACGGAAGCAGTGCTGAAGGATTGGTCAAAGAAGTCCAATCTTAAGGTGGAGAGAGTTAATTACACAGCTGAATTCATAGTTGACTCTAACTTTGGGGAGCCAGGAGCTATTACTGTGACAAACAAACACCAGAAAGAGTTCTTCTTGGAAAGCATAACCATTGAAGGATTTGCCACTGGACCAGTTCATTTCCCCTGCAATTCTTGGGTTCAAGCAAGAAAAGATCATCCCGGAAAAAGGATTTTCTTTTCCAATAAGCCTTATTTACCTGGTGATACACCTGCTGGGCTTAGATTATTGAGGGAAAAAGAGCTGAGAAATCTCAGAGGTGATGGCAAAGGAGTGAGAAACTTATCTGACAGAATATATGATTATGATATATACAATGATTTGGGAAATCCAGACAAAGGTATTGAATATGCCAGACCAAATCTTGGAGGATCAGATATGTATCCATACCCAAGACGGTGTCGTACAGGCCGTGAGCCCAGCGACACAGATATGTATGCAGAGAGTCGTGTGGAGAAGCCACTGCCTATGTATGTGCCAAGGGATGAACGTTTTGAGGAGTCGAAGCAGAACACATTCACAGTGAAGAGGCTGAAGGCAGTGCTGCATAACTTGATTCCTGGTCTTAAGGCCAGTCTTTCTGCTAGCAACCAAGACTTCAATGAATTCTCAGATGTGGATGGCCTTTACAGTGAAGGGTTGCTCATAAAGTTGGGGTTGCAAGATGACGTCTTGAAAAAAATCCCTTTTGTCAGCAAGATCCAAGAGTCCAGCCAGGGACTTCTTAAATATGACACCCCTAAGATTATTTCCAAGGACAAATTTGCATGGTTGCGAGATGACGAATTTGCCCGTCAAGCAATTGCAGGAGTTAACCCTGTTAGCATTGAGAAGCTCAAAGTTTTTCCACCAGTTAGCAAACTAGACCCTCAAATTTATGGCCCCCAAGAGTCTGCTCTTAAAGAAGAACATATTTTGAGTCAACTCGATGGCATGACAGTTCAAGAGGCAATAAATGAAAACAAGCTGTTTATCGTTGACTACCATGATATCTACCTTCCTTTCCTAGAAGGGATCAATGCCCTTGATGGTAGGAAATCATATGCCACACGTACCATATTTTTCTCCACACCACGTGACACTCTCAAACCTGTGGCCATTGAACTTAGCCTCCCTTTTGCTGGACCTAGTTCTAGATCAAAGCGTGTGGTTACACCACCTGTTGATGCAACCACTAACTGGATGTGGATGCTTGCTAAGGCACATGTTTGCTCCAATGATGCTGGGGTGCACCAACTTGTTAACCACTGGTTACGTACACATGCAAACTTGGAACCATTCATATTGGCTGCTCATAGGCAATTAAGTGCCATGCATCCAATTTACAAGCTATTGGACCCACACATGAGGTATACTTTGGAGATCAATGCCTTGGCTAGACAGAGTTTAATCAATGCCGATGGAATCATTGAAAATTGCTTCACTCCTGGACGCTACGCTATGGAGATTAGTTCTGCTGCTTACAAGAACTTTTGGCGCTTTGACATGGATAGTCTCCCAGCAGATCTCATCCGCAGGGGAATGGCAGTAGCTGACCCAACACAACCACATGGTCTAAAGCTAACATTGGAAGACTACCCTTATGCAGCTGATGGACTACTAATCTGGTCTGCCATAGAAGACTGGGTTCGGACCTATGTGAACCATTACTACCCTCATGCAAGCATGATATGCAACGACAAAGAGCTACAAGCTTGGTACTCGGAGTCAATCAATGTGGGTCATGCTGATCTTAGGCATGAAAGTTGGTGGCCTACATTGAACAACGGTGAGGATCTTGTCTCCATTCTTTCGATATTGATCTGGAATGCATCTGCACAACATGCTGCTCTTAACTTTGGGCAATACCCTTACGGAGGGTATGTGCCAAATCGTCCACCACTGACGAGAAGATTAATACCAGAAGAGGGTGATCCAGAATACGCAAGTTTTCTTGCTGACCCTCAAAAATATTATCTGAATGCATTGCCTAGCTTGTTGCAAGCCACAAAGTTTATGGCTGTGGTTGACACACTGTCCACTCACTCACCCGATGAGGAGTACTTGGGGGAGAGACAACAACCTTCGATTTGGTCAGGTGATGCTGAGATCATTGAGGCATTCTATGATTTCTCTGCAAAGGTTAGACAGATAGAGAAGGTTATTGATAGCAGAAACCTTGATAGGAGTCTAAGGAATCGATGTGGTGCAGGGGTTTTGCCTTATGAGTTGCTTGCTCCTAGCTCTGAATCTGGTGTTACATGCAGAGGGGTACCCAATAGTGTCTCTACATAA 2760 0.4366 MALTKQIMGSSLLERSLFVPSSPSSLFNQTRFLVPLESKRVVRVRKAAKFPVATISEDLIKGSSSSSSLSSSSTSLVSTEKPVKFKVRAVITVRNKIKEDLKETIVKHIDALADKIGRNVVLELVSTEIDPKTKAAKKSTEAVLKDWSKKSNLKVERVNYTAEFIVDSNFGEPGAITVTNKHQKEFFLESITIEGFATGPVHFPCNSWVQARKDHPGKRIFFSNKPYLPGDTPAGLRLLREKELRNLRGDGKGVRNLSDRIYDYDIYNDLGNPDKGIEYARPNLGGSDMYPYPRRCRTGREPSDTDMYAESRVEKPLPMYVPRDERFEESKQNTFTVKRLKAVLHNLIPGLKASLSASNQDFNEFSDVDGLYSEGLLIKLGLQDDVLKKIPFVSKIQESSQGLLKYDTPKIISKDKFAWLRDDEFARQAIAGVNPVSIEKLKVFPPVSKLDPQIYGPQESALKEEHILSQLDGMTVQEAINENKLFIVDYHDIYLPFLEGINALDGRKSYATRTIFFSTPRDTLKPVAIELSLPFAGPSSRSKRVVTPPVDATTNWMWMLAKAHVCSNDAGVHQLVNHWLRTHANLEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINALARQSLINADGIIENCFTPGRYAMEISSAAYKNFWRFDMDSLPADLIRRGMAVADPTQPHGLKLTLEDYPYAADGLLIWSAIEDWVRTYVNHYYPHASMICNDKELQAWYSESINVGHADLRHESWWPTLNNGEDLVSILSILIWNASAQHAALNFGQYPYGGYVPNRPPLTRRLIPEEGDPEYASFLADPQKYYLNALPSLLQATKFMAVVDTLSTHSPDEEYLGERQQPSIWSGDAEIIEAFYDFSAKVRQIEKVIDSRNLDRSLRNRCGAGVLPYELLAPSSESGVTCRGVPNSVST* 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0334 919 PANTHER LIPOXYGENASE 3, CHLOROPLASTIC 25 918 - -
Vra9g0334 919 Gene3D - 417 550 - -
Vra9g0334 919 PRINTS Plant lipoxygenase signature 193 211 IPR001246 GO:0016491
Vra9g0334 919 PRINTS Plant lipoxygenase signature 219 240 IPR001246 GO:0016491
Vra9g0334 919 PRINTS Plant lipoxygenase signature 258 274 IPR001246 GO:0016491
Vra9g0334 919 PRINTS Plant lipoxygenase signature 291 310 IPR001246 GO:0016491
Vra9g0334 919 PRINTS Plant lipoxygenase signature 359 380 IPR001246 GO:0016491
Vra9g0334 919 PRINTS Plant lipoxygenase signature 404 420 IPR001246 GO:0016491
Vra9g0334 919 PRINTS Plant lipoxygenase signature 443 462 IPR001246 GO:0016491
Vra9g0334 919 PRINTS Plant lipoxygenase signature 510 534 IPR001246 GO:0016491
Vra9g0334 919 PRINTS Plant lipoxygenase signature 831 845 IPR001246 GO:0016491
Vra9g0334 919 SUPERFAMILY Lipoxigenase 229 918 IPR036226 -
Vra9g0334 919 CDD PLAT_LH2 85 224 IPR042057 -
Vra9g0334 919 Pfam Lipoxygenase 236 902 IPR013819 GO:0016702|GO:0046872
Vra9g0334 919 SMART LH2_4 85 224 IPR001024 GO:0005515
Vra9g0334 919 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 85 227 IPR036392 GO:0005515
Vra9g0334 919 ProSitePatterns Lipoxygenases iron-binding region signature 2. 600 610 IPR020834 GO:0016702|GO:0046872
Vra9g0334 919 Pfam PLAT/LH2 domain 142 222 IPR001024 GO:0005515
Vra9g0334 919 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 226 919 IPR013819 GO:0016702|GO:0046872
Vra9g0334 919 Gene3D - 331 416 IPR027433 -
Vra9g0334 919 PRINTS Lipoxygenase signature 555 572 IPR013819 GO:0016702|GO:0046872
Vra9g0334 919 PRINTS Lipoxygenase signature 573 590 IPR013819 GO:0016702|GO:0046872
Vra9g0334 919 PRINTS Lipoxygenase signature 593 613 IPR013819 GO:0016702|GO:0046872
Vra9g0334 919 Gene3D - 552 918 - -
Vra9g0334 919 ProSiteProfiles PLAT domain profile. 101 223 IPR001024 GO:0005515
Vra9g0334 919 Gene3D - 228 330 - -
Vra9g0334 919 PANTHER LIPOXYGENASE 25 918 IPR000907 GO:0016702|GO:0046872
Vra9g0334 919 Gene3D PLAT/LH2 domain 68 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0334 Vra-Chr9 2745386 2750878 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0334 1 918 Acyl Lipid Metabolism Gene Families AT1G17420 71.659 0.0 1371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0334 K00454 - gmx:100793614 1723.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0334 9 2745386 2750878 Vra9g0334 9 2745386 2750878 ECH
Vra5g0011 5 123431 127660 Vra9g0334 9 2745386 2750878 PCT