Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0011 ATGCCACTGGCTCTTCATAATCAACTCATGGGTTTTACCTCCAAACTGCTTCTTCACAATAATACTTTTCAACACAACCAACCCTTCTTCGGCCTCAATCCTATCTCGCTTCCTTTCCACGACACAACACGAGGTACGAGGTTGAGAAGGGGACCAAGGTTTCCGGTAGCAGCTATCAGTCAGGATTTTATTAAGACCACACTGAGAGTGCATGCAGAGAAACCTGTGCAGTTCAAGGTCAGAGCTGTGGTAACAGTGAGGAACAAGATCAGAGAGGATTTCAGAGATACCATGCTGAAGCATTTGGATGCCATCAGTGATAGTATAGGGACAAGAAATGTTGTGCTGGAGCTTATCAGCACTGACATTAAACCAAAAACGAAATCTCCAAAGAAGAGCAACAAAGCAGCCCTAAAGGACTGGTCAAAGAAATCCAGTGTCAAAGCAGAGAGAGTTAATTATACAGCCGAATTCATTGTGGACTCAGATTTTGGAGTCCCTGGAGCTATTGCTGTGACAAACAAACACCAAAGAGAGTTCTTCTTGGAAAGTATAGTCATCGAAGGGTTTGCGATTGGAGCAGTTCATTTTCCCTGCAACTCATGGGTACAAGGAGAGAGGATATTCTTTTCAAACAAGGCATATTTACCTGGTGATACACCTGCTGGGCTTAGAGTACTGAGGGAGAAAGAGTTGATAAATCTTAGAGGTGATGGGAAAGGAGTTAGAAAATTGTGTGATAGAATATATGATTTCGACACATACAACGATTTGGGTAATCCAGATGAAGGAATTGAGCTTACCAGACCGACTCTTGGTGGAACCCAAAACCATCCATACCCAAGACGCTGTCGTACTGGTCGGGCCCCCACAGATACAGATATGCATGCTGAGAGTCGTGTGGATTTGCCACAGCCTATGTACGTACCAAGAGACGAGCAATTCGACGAGTCTAAAATGAACACATTCGTAATCAAGAGGCTGAAGGCAGTGCTCCATAACTTGATCCCTGGCCTTAAGGCTAGTCTCTCTGCTGATAACCAAGACTTCAACCGATTTTCAGACTTTGACGACCTTTACAATGATGGCCAGCCCTTGCAAGATGAAATTATAAAGAAATTCCCACTGTCACAAGTGGTCATAAAGATACAACAATGTAGCCAAGAACTTCTCAAGTATGACACTCCCAAAATTATTTCCAAGGACAAGTTTGCTTGGCTTCGAGATGACGAATTCGCCAGGCAAGCAATAGCAGGAGTCAACCCTGTTAACATTGAGCGGCTTGAAGTTTTCCCACCGGTGAGCAAACTTGACCCCGAAATGTATGGCCACCAAGAGTCTGCACTCAAAGAAGAACATATTTTGGCACAACTGAATGGCATGACCGTGCAACAGGCAATACAGGCAAATAAGCTGTTCATGATAAACTATCACGATGTCTATGTTCCATTTGTTGACCGGATCAACGCCCTTGATGGTAGAAAATCCTATGCTACCCGCACCATATTTTTCTTGACACCGCTTGGCACTCTCAAACCAATTGCTATAGAACTTAGCCTCGGACCAAGTTCCGGATCGAAACGCGTAGTTACCCCTCCTGTGGACGCAACCACATATTGGAAGTGGCAGCTTGCGAAAGCTCATGTTTGTGCCAATGATGCCGGTGTGCACCAACTTGTTAACCATTGGTTACGCACACATGCCTGCACGGAACCATTTATATTGTCGGCTCATAGACAATTAAGTGCAATGCATCCTGTTTTTAAGCTGTTGGATCCACACATGAGGTACACATTGGATATCAATGCTTTAGCTCGCCAGAAACTGATCAATGCTGATGGAATCATCGAGTCTAGTTTTACACCTGGGCGCTACTGCACGGAGATCAGTTCTGCTGCATACAAACACTTGTGGCGCTTTGACATGGAAGGCCTCCCGGCAGATCTCATACGCAGGGGAATGGCGGTACCTGACGCAACACAGCCAAATGGTGTAAAACTGGTAATAGAAGACTACCCTTACGCTGCAGATGGGCTTATGGTTTGGTCTGCAATTGAGAACTGGGTCCGCGCCTACGTGAAGCACTACTACGGCCATCCAAGCCAGGTTTGCAATGACAGGGAGCTACAAGCATGGTACTCTGAATCAATCAATGTGGGACATGCAGATCTTAGGCATGAAAGGTGGTGGCCGACGTTGAATGATAGTGAGGATCTTGTGTCTATACTAACCACATTGATTTGGACGGTATCCGCACAGCATGCAGCCATTAATTTTGGACAGTACCCTTACGGAGGTTATGTGCCGAATCGTCCTCCGCTAATGAGAAGATTAATCCCAGAAGACGAAGAGGAAAAAAAGAGTGAAAAAGAAGCGAATTTCATGGCAGATCCCGAAAAGTATTTCCTAAATGCGCTGCCAAGCTTGTTACAAGCTACAAAATATATGGCAATAGTTGACACTCTCTCTACCCACTCACCGGACGAGGAGTATTTGGGGGAGCGCCAACAGTCATCCATTTGGTCAGGCGAAGCAGAGATCATCGAGGCATTCTACAACTTCTCCGCAGAAATGAGAGGGATAGAGAAGGAGATTGAGAGAAGGAACTGTGACCCAACACTCAGAAACCGATGTGGTCCAGGGGTTTTACCTTACGAGTTACTTGCACCTACCTCTCAACCCGGCGTTACATGCAGAGGGATTCCCAACAGTGTCTCCACGTAA 2724 0.457 MPLALHNQLMGFTSKLLLHNNTFQHNQPFFGLNPISLPFHDTTRGTRLRRGPRFPVAAISQDFIKTTLRVHAEKPVQFKVRAVVTVRNKIREDFRDTMLKHLDAISDSIGTRNVVLELISTDIKPKTKSPKKSNKAALKDWSKKSSVKAERVNYTAEFIVDSDFGVPGAIAVTNKHQREFFLESIVIEGFAIGAVHFPCNSWVQGERIFFSNKAYLPGDTPAGLRVLREKELINLRGDGKGVRKLCDRIYDFDTYNDLGNPDEGIELTRPTLGGTQNHPYPRRCRTGRAPTDTDMHAESRVDLPQPMYVPRDEQFDESKMNTFVIKRLKAVLHNLIPGLKASLSADNQDFNRFSDFDDLYNDGQPLQDEIIKKFPLSQVVIKIQQCSQELLKYDTPKIISKDKFAWLRDDEFARQAIAGVNPVNIERLEVFPPVSKLDPEMYGHQESALKEEHILAQLNGMTVQQAIQANKLFMINYHDVYVPFVDRINALDGRKSYATRTIFFLTPLGTLKPIAIELSLGPSSGSKRVVTPPVDATTYWKWQLAKAHVCANDAGVHQLVNHWLRTHACTEPFILSAHRQLSAMHPVFKLLDPHMRYTLDINALARQKLINADGIIESSFTPGRYCTEISSAAYKHLWRFDMEGLPADLIRRGMAVPDATQPNGVKLVIEDYPYAADGLMVWSAIENWVRAYVKHYYGHPSQVCNDRELQAWYSESINVGHADLRHERWWPTLNDSEDLVSILTTLIWTVSAQHAAINFGQYPYGGYVPNRPPLMRRLIPEDEEEKKSEKEANFMADPEKYFLNALPSLLQATKYMAIVDTLSTHSPDEEYLGERQQSSIWSGEAEIIEAFYNFSAEMRGIEKEIERRNCDPTLRNRCGPGVLPYELLAPTSQPGVTCRGIPNSVST* 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0011 907 CDD PLAT_LH2 78 212 IPR042057 -
Vra5g0011 907 SUPERFAMILY Lipoxigenase 216 906 IPR036226 -
Vra5g0011 907 ProSiteProfiles PLAT domain profile. 94 217 IPR001024 GO:0005515
Vra5g0011 907 Gene3D - 216 318 - -
Vra5g0011 907 Gene3D - 536 906 - -
Vra5g0011 907 PRINTS Lipoxygenase signature 539 556 IPR013819 GO:0016702|GO:0046872
Vra5g0011 907 PRINTS Lipoxygenase signature 557 574 IPR013819 GO:0016702|GO:0046872
Vra5g0011 907 PRINTS Lipoxygenase signature 577 597 IPR013819 GO:0016702|GO:0046872
Vra5g0011 907 PRINTS Plant lipoxygenase signature 187 205 IPR001246 GO:0016491
Vra5g0011 907 PRINTS Plant lipoxygenase signature 246 262 IPR001246 GO:0016491
Vra5g0011 907 PRINTS Plant lipoxygenase signature 279 298 IPR001246 GO:0016491
Vra5g0011 907 PRINTS Plant lipoxygenase signature 347 368 IPR001246 GO:0016491
Vra5g0011 907 PRINTS Plant lipoxygenase signature 391 407 IPR001246 GO:0016491
Vra5g0011 907 PRINTS Plant lipoxygenase signature 430 449 IPR001246 GO:0016491
Vra5g0011 907 PRINTS Plant lipoxygenase signature 497 521 IPR001246 GO:0016491
Vra5g0011 907 PRINTS Plant lipoxygenase signature 819 833 IPR001246 GO:0016491
Vra5g0011 907 PANTHER LIPOXYGENASE 3, CHLOROPLASTIC 40 906 - -
Vra5g0011 907 PANTHER LIPOXYGENASE 40 906 IPR000907 GO:0016702|GO:0046872
Vra5g0011 907 Gene3D - 319 403 IPR027433 -
Vra5g0011 907 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 214 907 IPR013819 GO:0016702|GO:0046872
Vra5g0011 907 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 78 215 IPR036392 GO:0005515
Vra5g0011 907 SMART LH2_4 78 212 IPR001024 GO:0005515
Vra5g0011 907 ProSitePatterns Lipoxygenases iron-binding region signature 1. 557 571 IPR020833 GO:0016702|GO:0046872
Vra5g0011 907 MobiDBLite consensus disorder prediction 263 294 - -
Vra5g0011 907 Pfam PLAT/LH2 domain 131 207 IPR001024 GO:0005515
Vra5g0011 907 Gene3D - 404 534 - -
Vra5g0011 907 Pfam Lipoxygenase 223 890 IPR013819 GO:0016702|GO:0046872
Vra5g0011 907 ProSitePatterns Lipoxygenases iron-binding region signature 2. 584 594 IPR020834 GO:0016702|GO:0046872
Vra5g0011 907 Gene3D PLAT/LH2 domain 61 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0011 Vra-Chr5 123431 127660 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0011 3 906 Acyl Lipid Metabolism Gene Families AT1G17420 66.631 0.0 1268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0011 K00454 - gmx:100811820 1556.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0011 5 123431 127660 Vra9g0334 9 2745386 2750878 PCT