Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0260 ATGACTATGTTCATCTCTACCATTTATCTGTTGACTCTCTTTTCTTCCATTTATGGTACTGCAGCTACCCATCTTCACACTCTTTCTTCTGATTCTTATAATCAACCATACAGAACAGCTTATCACTTCCAACCTCCCAAGAATTGGATAAATGATCCCAATGGACCATTGAGATATGGAGGACTTTATCACCTGTTCTATCAGTACAATCCTAAAGGTGCAGTTTGGGGAAATATTGTGTGGGCACATTCAGTGTCAAAGGATCTTGTGAACTGGACCCCACTAGATCCTGCAATCTTCCCATCTCAGCCGTCTGATATAAATGGTTGTTGGTCAGGATCAGCCACACTGCTACCTGGTAATAAACCAGTCATTTTATACACTGGAATTAACCCAAAGAATCAACAAGTCCAAAACTTGGCCAAGCCTAAAAATTTGTCTGACCCTTTTCTCAGGGAATGGGTGAAGTCTCCAAAAAACCCTCTAATGGCACCAACCAGTGCTAATGAGATCAATTCAAGTTCATTTAGGGATCCTACCACTGCTTGGCTAGGCCAAGATGGGCATTGGAGAGTACTTGTTGGAAGCAAAAGAAGAACTAGAGGAATGGCACTTTTGTATAGGAGCAAAGATTTTTCTGATTGGATTCAAGCCAAACACCCTTTGCATTCAACTCTAGGCAGTGGAATGTGGGAGTGTCCTGATTTTTTCCCAGTTTTGAAGAATGGTCAATTGGGTGTTGACACATCTGTGAATGATGATTATGTCAGTCATGTGCTGAAGGCTAGTTTGGATGACAGAAAACATGATTACTACATGATAGGGAGCTACAATGCTGCCAAAGATAAGTTTATCCCAGATAAAGGGTTTGAAGAATTTGTTTTAAGATATGATTATGGAAAATACTATGCCTCAAAGACTTTCTTTGATGATGGAAAGAAGAGAAGGGTTTTGCTCGGGTGGGTGAACGAATCATCAAGTGTTGCTGATGATATCAAGAAAGGATGGTCTGGAATCCATACAATTCCAAGGGCTATTTGGCTGCATAAGTCTGGTAAACAATTGGTACAGTGGCCAGTAGAGGAAATTGAAAAGCTACGAGCAAAACCAGTCAATTTGCCACCCCAAGCCTTGAAAGGAGGCAAGTTACTACAAATTAATGGTGTCACAGCAACACAGGCTGATGTTGAAATTTCATTTGAAGTAAGTGGTGAATTGAGAAAGGCTGAAGATTTGAAGTATTGGACTGACCCCCAAATTCTATGTAGCACAAAGGGTTCATCCCTGAGAAGTAGATTGGGTCCTTTTGGTTTGCTGGTTTTTGCTTCAGAGGGATTGCAAGAGTTCACATCAGTTTTCTTCAGAATATTCAGATATCAACACAAATATTTGGTACTCTTGTGCAGTGACCAGAGCAGGTCTTCTTTAAATAAGAACAACGATTTGACCACTTATGGAACTTTTGTTGACGTGAATCCTCTTCATGAGAAGCTGTCATTGAGAACCTTGATTGATCATTCAGTGGTAGAGAGTTTTGGAGGAGAAGGAAGAGGGTGCATCACTGCCAGAGTTTATCCTACATTAGCAATAAATGATAAAGCACAAATATATGCTTTCAATAATGGTACTGCAGATGTCAAGATTACAAGATTTAGTGCTTGGAGCATGAAGAAAGCACACATACTGTGA 1689 0.4026 MTMFISTIYLLTLFSSIYGTAATHLHTLSSDSYNQPYRTAYHFQPPKNWINDPNGPLRYGGLYHLFYQYNPKGAVWGNIVWAHSVSKDLVNWTPLDPAIFPSQPSDINGCWSGSATLLPGNKPVILYTGINPKNQQVQNLAKPKNLSDPFLREWVKSPKNPLMAPTSANEINSSSFRDPTTAWLGQDGHWRVLVGSKRRTRGMALLYRSKDFSDWIQAKHPLHSTLGSGMWECPDFFPVLKNGQLGVDTSVNDDYVSHVLKASLDDRKHDYYMIGSYNAAKDKFIPDKGFEEFVLRYDYGKYYASKTFFDDGKKRRVLLGWVNESSSVADDIKKGWSGIHTIPRAIWLHKSGKQLVQWPVEEIEKLRAKPVNLPPQALKGGKLLQINGVTATQADVEISFEVSGELRKAEDLKYWTDPQILCSTKGSSLRSRLGPFGLLVFASEGLQEFTSVFFRIFRYQHKYLVLLCSDQSRSSLNKNNDLTTYGTFVDVNPLHEKLSLRTLIDHSVVESFGGEGRGCITARVYPTLAINDKAQIYAFNNGTADVKITRFSAWSMKKAHIL* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0260 562 PANTHER CELL-WALL INVERTASE 5 561 - -
Vra9g0260 562 ProSitePatterns Glycosyl hydrolases family 32 active site. 42 55 IPR018053 GO:0004553|GO:0005975
Vra9g0260 562 Pfam Glycosyl hydrolases family 32 C terminal 362 555 IPR013189 -
Vra9g0260 562 SUPERFAMILY Arabinanase/levansucrase/invertase 32 360 IPR023296 -
Vra9g0260 562 SMART glyco_32 42 516 IPR001362 GO:0004553|GO:0005975
Vra9g0260 562 Pfam Glycosyl hydrolases family 32 N-terminal domain 42 359 IPR013148 -
Vra9g0260 562 CDD GH32_Fruct1-like 48 348 - -
Vra9g0260 562 Gene3D Glycosyl hydrolase domain; family 43 46 369 IPR023296 -
Vra9g0260 562 Gene3D - 370 556 - -
Vra9g0260 562 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 5 561 - -
Vra9g0260 562 SUPERFAMILY Concanavalin A-like lectins/glucanases 359 559 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0260 Vra-Chr9 1934160 1938177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0260 59 561 Glycoside Hydrolase AT3G13790 64.717 0.0 680
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0260 K01193 - gmx:100777339 1027.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2539 5 32232252 32235260 Vra9g0260 9 1934160 1938177 PCT