Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2539 ATGGCTATCTCTGCAATTTTCTTGTCTGCTGTATTCTTTCTCATCTATGGCAATGGCGTTCTTCCCATTGAAGCTACCCACCATGTTTACAGAAATCTTCAGACTCTTTCTTCTCACTCCTCTGATAATCAACCTTACAGAACTGCTTATCATTTTCAACCTCCCAAGAATTGGATAAACGATCCTAATGCACCAATGAGGTACAAAGGACTTTATCATCTGTTCTATCAATACAATCCAAAAGGTGCTGTTTGGGGAAATATAGTGTGGGCCCACTCAGTATCAAAGGATTTAGTTAATTGGACTCCATTGGATCATGCCATCTATCCTTCTCAGCAGTCTGATATCAACGGTTGTTGGTCAGGCTCAGCAACTACCCTTCCTGGGGGCAAACCAGCCATTTTATACACAGGAATTGACCCTAACAATCACCAGGTTCAAAACTTAGCCATACCCAAAAATTTCTCTGACCCTTTACTAAGGGAATGGGTTAAGTCACCCAAGAATCCTCTAATGGCCCCAACTCAAGCTAACCAGATAAATTCTAGCTCGTTTAGGGACCCCACCACTGCTTGGAAAGGCAAAGATGGGTACTGGAGGGTGCTGATTGGAAGCAAAGTACACAGAAGGGGTACGGCAATTTTGTACAAAAGCAAAAACTTTGTGAATTGGGTTCAAGCAGACCACCCCCTTCATTCAGCAGAAGGCACTGGGATGTGGGAGTGCCCTGATTTCTATCCAGTTCTGAATAAATTTCCATTGACTACTGGCCTTGACACATCAGTGAATGGTGATCATGTTAGGCATGTGCTCAAGGTTAGCTTGGATGATACCAAACACGATCATTATCTGATTGGGACTTATGACTCTGAAAAGGATATCTTCACTCCGGATAGCGGATTTGAGAATAGTAAACCCATTTTAAGACACGACTATGGAAAATATTATGCCTCAAAAACCATTTTTGAAGATGGACAGAACAGAAGGGTCTTATTCGGTTGGGTTAACGAATCCTCAAGCGTTGCTGATGATATCAAGAAAGGATGGTCCGGAATCCATACTATTCCAAGGACCATTTGGCTTCATAAATCGGGGAAACAGTTGGTGCATTGGCCGGTTGCTGAAATTGAAAGCTTGCGTGTGAACCCTGTCCACTGGCACTCCAAAGTGGTCAATGGTGGTGAAACTCTTCAAGTGACCGGTGTTACTGCGGCACAGGCTGACGTTGAAATTGCATTTGAAGTAAATGGGTTTGGAAAGGCGGAAGTATTGGAGCATTGGGAAGATCCTCAAATTCTGTGTGGTCGAAAGGGTGCAAACGTAAAAGGTGGTTTGGGACCCTTTGGTTTGTTAGTTTTTGCTTCTCGTGGCTTGCAAGAGTACACAGCAGTGTTTTTTAGAATATTTAGATACCAAAATAAAAATTTGGTTCTCATGTGCAGCGACCAAAGCAGGTCTTCTTTGAATAACGATAACGACAAGACAACCTACGGAACTTTTGTGGACGTGGACCCTCTTCGCGAGAAGCTCTCTCTGAGAACTTTGATTGATCACTCGGTGGTAGAAAGTTTTGAAGGCGAAGGAAGAGCGTGCATCACAGCAAGAGTGTATCCGACGATAGCAATCAACGACAAGGCACGGTTATATGCTTTCAACAATGGAACTGCCTCTGTCAAGATCACAAAGTTGAGTGCTTGGAGCATGAAGAAAGCAAAAATCAACTGA 1725 0.433 MAISAIFLSAVFFLIYGNGVLPIEATHHVYRNLQTLSSHSSDNQPYRTAYHFQPPKNWINDPNAPMRYKGLYHLFYQYNPKGAVWGNIVWAHSVSKDLVNWTPLDHAIYPSQQSDINGCWSGSATTLPGGKPAILYTGIDPNNHQVQNLAIPKNFSDPLLREWVKSPKNPLMAPTQANQINSSSFRDPTTAWKGKDGYWRVLIGSKVHRRGTAILYKSKNFVNWVQADHPLHSAEGTGMWECPDFYPVLNKFPLTTGLDTSVNGDHVRHVLKVSLDDTKHDHYLIGTYDSEKDIFTPDSGFENSKPILRHDYGKYYASKTIFEDGQNRRVLFGWVNESSSVADDIKKGWSGIHTIPRTIWLHKSGKQLVHWPVAEIESLRVNPVHWHSKVVNGGETLQVTGVTAAQADVEIAFEVNGFGKAEVLEHWEDPQILCGRKGANVKGGLGPFGLLVFASRGLQEYTAVFFRIFRYQNKNLVLMCSDQSRSSLNNDNDKTTYGTFVDVDPLREKLSLRTLIDHSVVESFEGEGRACITARVYPTIAINDKARLYAFNNGTASVKITKLSAWSMKKAKIN* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2539 574 CDD GH32_Fruct1-like 57 361 - -
Vra5g2539 574 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 2 574 - -
Vra5g2539 574 PANTHER CELL-WALL INVERTASE 2 574 - -
Vra5g2539 574 Gene3D - 383 568 - -
Vra5g2539 574 Pfam Glycosyl hydrolases family 32 N-terminal domain 51 372 IPR013148 -
Vra5g2539 574 Pfam Glycosyl hydrolases family 32 C terminal 375 567 IPR013189 -
Vra5g2539 574 ProSitePatterns Glycosyl hydrolases family 32 active site. 51 64 IPR018053 GO:0004553|GO:0005975
Vra5g2539 574 SUPERFAMILY Arabinanase/levansucrase/invertase 42 373 IPR023296 -
Vra5g2539 574 Gene3D Glycosyl hydrolase domain; family 43 55 382 IPR023296 -
Vra5g2539 574 SMART glyco_32 51 528 IPR001362 GO:0004553|GO:0005975
Vra5g2539 574 SUPERFAMILY Concanavalin A-like lectins/glucanases 372 570 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2539 Vra-Chr5 32232252 32235260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2539 66 574 Glycoside Hydrolase AT3G13790 63.250 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2539 K01193 - gmx:100776791 1054.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2539 5 32232252 32235260 Vra9g0260 9 1934160 1938177 PCT