Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0250 ATGGATTCAGTTGGTGCACTCAAATTCTTGTTGTTCCAAGTTCTATGGCTCTGGAACTTTCTACCTTCTTGTCAAGGTGAGAAGCAGTGGCATGAAAAAAGTTACCCTTTTATCAGAAATGCAAGCTCATTCTCATCACCATCAATTTCAACAACCACATCCAACAATGAGTATGACTACATAATAGTGGGAGGTGGCACAGCAGGGTGTCCTTTGGCTGCAACCCTCTCTCAGAAGTTCAATGTTCTTATGCTTGAAAGAGGAGGTGTTCCCTTCACCAACCCCAATGTTTCATATCTTGAGAATTTCCACATTACCTTGGCAGATGTCTCACCAACTTCAGCTTCTCAATTCTTCGTTTCATCTGATGGAGTCTACAATTCAAGGGCCAGGGTCTTAGGAGGTGGCAGTTCTATCAATGCTGGTTTCTACACCAGAGCAGATCCAAGGTTTATAAAGAAGGTGGGATGGGATATCAACCTAGTGAATCAGTCATATCCATGGATTGAAAACCAAATTGTTCATCGTCCAAAGTTTTCAGCATATCAAAGGGCAGTGAGGGACAGTCTTCTAGACTCTGGTGTGTCACCTTTCAATGGCTTCACCTATGATCATCTCTATGGAACAAAAGTTGGTGGAACCATTTTTGACAAATATGGGCGGCGCCACACAGCTGCTGAACTGCTTGCTTCAGGGAACCATGAAAAACTTACTGTTTTGGTCTATGCCACTGTCCAGAAGATTGTGTTTGATACAAAAGGAAAGAAACCAAAAGCTGTGGGGGTTATTTTTCAAGATGAGAATGGGAAACAGCATGAAGCTGTTCTGGCAAATGATAGGCATAGTGAAGTGATAATGTCTTCTGGGGCAATTGGGACTCCTCAACTGCTGATGCTTAGTGGAATTGGACCAAAAGAAGAACTTCAGAAGTTGAACATCCCAGTGATCCTTGACAACCACTTTGTTGGAAAAGGAATGGTAGACAATCCCATGAACACAATGTTTGTTCCTTCTGAAAGACCTGTTCATCAGTCACTCATAGAAACTGTTGGAATCACCAAGATGGGCGTGTACATTGAGGCTAGCAGTGGGTTTAGCCAGTCTAATGATAGCATTCATTGCCACCATGGTATTGTGTCAGCAGAGATTGGGCAGCTTTCCACAATCCCTCCTAAGCAAAGATCACCAGAAGCTATCAAAGAATTTATCAAGAACAAGAAAGACCTACCTATTGAAGCATTTAAGGGAGGCTTTATTCTGTCAAAAGTTGCCAATCCTTGGTCAGTTGGTGAGCTCAAGCTGGTCAACACCAACGTGAAAGACAATCCATCTGTTGCCTTCAACTACTTCAGTCATCCATATGATCTTGAGCGCTGTGTTAAGGGGATCCGTTTGGCCATTAAGGTTGTCCAGTCAAAACATTTCACAAACTACACTTTAAGTGGCAGAAAAACAGCGGAGGAACTCCTCAACCTCACTGTGAAGGCTAATGTCAACTTCATACCAAAGCATGCCAAAGACACAAAGTCACTAAAGCAATTCTGCAAAGACACTGTGATCACAATTTGGCACTACCATGGAGGGTGCCGAGTGGGGAAGGTAGTCAACCATGATTACATGGTCCTTGGTGTTGACAGACTCCGTGTGGTAGATGGCTCAACATTTGATGAATCACCAGGAACAAATCCTCAAGCCACTGTCATGATGATGGGCAGGTACATGGGACTGAAGATTTTGAGAGACAGGTTGGGGAAATTGGCAGGTATATAA 1770 0.4333 MDSVGALKFLLFQVLWLWNFLPSCQGEKQWHEKSYPFIRNASSFSSPSISTTTSNNEYDYIIVGGGTAGCPLAATLSQKFNVLMLERGGVPFTNPNVSYLENFHITLADVSPTSASQFFVSSDGVYNSRARVLGGGSSINAGFYTRADPRFIKKVGWDINLVNQSYPWIENQIVHRPKFSAYQRAVRDSLLDSGVSPFNGFTYDHLYGTKVGGTIFDKYGRRHTAAELLASGNHEKLTVLVYATVQKIVFDTKGKKPKAVGVIFQDENGKQHEAVLANDRHSEVIMSSGAIGTPQLLMLSGIGPKEELQKLNIPVILDNHFVGKGMVDNPMNTMFVPSERPVHQSLIETVGITKMGVYIEASSGFSQSNDSIHCHHGIVSAEIGQLSTIPPKQRSPEAIKEFIKNKKDLPIEAFKGGFILSKVANPWSVGELKLVNTNVKDNPSVAFNYFSHPYDLERCVKGIRLAIKVVQSKHFTNYTLSGRKTAEELLNLTVKANVNFIPKHAKDTKSLKQFCKDTVITIWHYHGGCRVGKVVNHDYMVLGVDRLRVVDGSTFDESPGTNPQATVMMMGRYMGLKILRDRLGKLAGI* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0250 589 PIRSF Alcohol_oxidase 38 588 IPR012132 GO:0050660
Vra9g0250 589 ProSitePatterns GMC oxidoreductases signature 2. 289 303 IPR000172 GO:0016614|GO:0050660
Vra9g0250 589 PANTHER GLUCOSE-METHANOL-CHOLINE (GMC) OXIDOREDUCTASE FAMILY PROTEIN 3 589 - -
Vra9g0250 589 SUPERFAMILY FAD-linked reductases, C-terminal domain 326 528 - -
Vra9g0250 589 Pfam GMC oxidoreductase 426 572 IPR007867 GO:0016614
Vra9g0250 589 Gene3D - 175 521 - -
Vra9g0250 589 PANTHER OSJNBA0019K04.7 PROTEIN 3 589 - -
Vra9g0250 589 Pfam GMC oxidoreductase 218 330 IPR000172 GO:0016614|GO:0050660
Vra9g0250 589 Pfam GMC oxidoreductase 58 150 IPR000172 GO:0016614|GO:0050660
Vra9g0250 589 SUPERFAMILY FAD/NAD(P)-binding domain 49 581 IPR036188 -
Vra9g0250 589 Gene3D - 58 571 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0250 Vra-Chr9 1844623 1850843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0250 12 582 Miscellaneous Gene Families AT5G51950 49.573 0.0 549
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0250 K15403 - gmx:100788704 1055.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2530 5 32161557 32166882 Vra9g0250 9 1844623 1850843 PCT