Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2530 ATGGCGTCCATTGGTGCACTCAAATTCTTCCTTTACTTACTTCCATGTCTCCTCAACTATCTACCTCATTCTCAAGGTAAGCAGAATTGGAATGGTGAGTACCCATTTATCAGGAGAGGAAGTTCATTGGAGCATTCAGAGAATGGTGGTTATGACTATATAATAGTGGGAGGTGGCACTGCAGGGTGTCCATTGGCTGCAACTTTGTCTAAGAAATTCAAAGTTCTGGTGCTTGAAAGAGGAGGCGTCCCTTTCAACAACCCCAATGTGACATTTCTGCGAAACTTTCACATAACTTTGGCAGACACTTCACCAACTTCGGCTTCTCAGTACTTCATTTCAACAGATGGAGTGCTGAATGCAAGAGGAAGGGTTTTGGGAGGTGGCAGTTCCATTAACGCTGGCTTCTACACTCGAGCAAACCCTAGATTTATAAGGAAGGTTGGGTGGGATACAAAGCTAGTGAACGAGTCTTATCCTTGGGTAGAGAAGCAGGTTGTTCATCGTCCAAATTTTTCACATTGGCAGAGAGCAGTCAGGGACGGGCTTCTAGATGCTGGTGTGTCACCTTTTAATGGATTCACCTATGATCATAAGTATGGAACAAAAGTTGGTGGAACCATTTTTGACAGATTTGGCCGCCGCCACACCGCTGCTGAGTTGCTTGCTTCTGGGAATCCTAAGAAACTTACTGTCCTCGTCCATGCCACTGTCCAAAAGATTGTTTTTGATACAACAGGAAAAAAGCCAAAAGCCATTGGGGTTATTTTCAAGGACGAAAATGGAAAGCAGCATCAGGCATTTCTGGGAACTGGGAGGCAGAGTGAAGTGATTGTGTCTAGTGGGGCAATTGGCACTCCTCAATTGCTACTGCTCAGTGGAATTGGCCCCAGAGAAGAGCTTCAGAAATTCAACATCCCTGTAGTGCTTCACAATGAATTTGTCGGTAAAGGCATGGCTGATAACCCCATGAACACAATCTTTGTTCCTTCCAAGAGACCAGTTCAGCAGTCACTCATAGAAACTGTCGGTATAACCAATCTGGGTGTGTACATTGAGACTAGTTGTGGCTTTGGGCAGTCCAAAGACAGCATTCACTGTCACCATGGTATCTTGTCAGCTGAGATTGGGCAGCTGTCGACAATTCCACCAAAGCAAAGATCACGAGAAGCTGTTGAGGCATTTGTGAAAAGCAAGAAAGACATACCAATTGAAGCATTCAGGGGAGGGTTCATACTGTCAAAAGTTGCGAATCCTTGGTCAACTGGTGAACTGAGGTTGATAAACACCAACGTGGAGGAGAACCCTGCTGTTACCTTCAACTATTTCAGCCACCCTTATGATCTTAAGCGCTGCGTGGAGGGTATCCGCTTAGCCATAAAGGTTGTTCAGTCACAGCACGTCACAAACTACACTATGTGTGACAGACAAAGCGCAGAGAAAATGTTGAACATCAGTGTGCAGGCAAATATCAACCTCATACCCAAACATGCCAATGACACAAAGTCAATGGAACAGTTTTGTAGAGACTCTGTCATCACTATTTGGCACTACCATGGTGGGTGCCATGTGGGGAAAGTAGTAAACTCTGAGTATAAGGTTCTTGGTGTTGACAGACTCCGTGTGGTAGATGGCTCCACATTTTCTGAGTCCCCAGGAACCAATCCTCAAGCCACTGTCATGATGATGGGCAGGTACATGGGACTGAAGATTCTAAGAGACAGGTTGGGGAAATTGGGTGATATTTAA 1749 0.4523 MASIGALKFFLYLLPCLLNYLPHSQGKQNWNGEYPFIRRGSSLEHSENGGYDYIIVGGGTAGCPLAATLSKKFKVLVLERGGVPFNNPNVTFLRNFHITLADTSPTSASQYFISTDGVLNARGRVLGGGSSINAGFYTRANPRFIRKVGWDTKLVNESYPWVEKQVVHRPNFSHWQRAVRDGLLDAGVSPFNGFTYDHKYGTKVGGTIFDRFGRRHTAAELLASGNPKKLTVLVHATVQKIVFDTTGKKPKAIGVIFKDENGKQHQAFLGTGRQSEVIVSSGAIGTPQLLLLSGIGPREELQKFNIPVVLHNEFVGKGMADNPMNTIFVPSKRPVQQSLIETVGITNLGVYIETSCGFGQSKDSIHCHHGILSAEIGQLSTIPPKQRSREAVEAFVKSKKDIPIEAFRGGFILSKVANPWSTGELRLINTNVEENPAVTFNYFSHPYDLKRCVEGIRLAIKVVQSQHVTNYTMCDRQSAEKMLNISVQANINLIPKHANDTKSMEQFCRDSVITIWHYHGGCHVGKVVNSEYKVLGVDRLRVVDGSTFSESPGTNPQATVMMMGRYMGLKILRDRLGKLGDI* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2530 582 PIRSF Alcohol_oxidase 35 581 IPR012132 GO:0050660
Vra5g2530 582 SUPERFAMILY FAD-linked reductases, C-terminal domain 319 521 - -
Vra5g2530 582 ProSitePatterns GMC oxidoreductases signature 2. 282 296 IPR000172 GO:0016614|GO:0050660
Vra5g2530 582 Gene3D - 168 514 - -
Vra5g2530 582 PANTHER OSJNBA0019K04.7 PROTEIN 2 582 - -
Vra5g2530 582 Pfam GMC oxidoreductase 51 323 IPR000172 GO:0016614|GO:0050660
Vra5g2530 582 PANTHER GLUCOSE-METHANOL-CHOLINE (GMC) OXIDOREDUCTASE FAMILY PROTEIN 2 582 - -
Vra5g2530 582 Pfam GMC oxidoreductase 419 565 IPR007867 GO:0016614
Vra5g2530 582 SUPERFAMILY FAD/NAD(P)-binding domain 50 574 IPR036188 -
Vra5g2530 582 Gene3D - 51 564 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2530 Vra-Chr5 32161557 32166882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2530 7 580 Miscellaneous Gene Families AT3G56060 48.709 0.0 544
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2530 K15403 - gmx:100784433 1051.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2530 5 32161557 32166882 Vra9g0250 9 1844623 1850843 PCT