Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0249 ATGGCGGATAGAGAGTCTTGTTGTTCAACTCAACTTATTGACGGAGATGGTGTATTCAATGTCTCTGGGGTTGAAAACTTTATGAAGGAGGTGAAGTTGGCTGAATGTGGGCTTTCGTATGCTGTAGTTTCTATAATGGGTCCACAAAGTAGTGGCAAGAGCACACTATTAAATAACTTGTTTGGTACCAACTTCAGAGAGATGGATGCTTTCAAGGGAAGGTCTCAAACAACCAAAGGAATCTGGATGGCTAGATGCAATGGCATAGAGCCTTGTACACTTGTTATGGATTTGGAGGGTACCGATGGAAGAGAACGTGGAGAGGATGACACTGCTTTTGAAAAGCAGAGTGCTTTATTTGCTCTTGCTGTATCAGATATTGTGTTAATAAACATGTGGTGCCATGACATTGGCCGTGAGCAAGCTGCAAATAAGCCACTTCTAAAAACTGTCTTTCAAGTCATGATGAGATTGTTCAGTCCACGAAAAACAACACTGTTGTTTGTCATACGTGATAAAACAAGGACGCCACTTGAAAATTTAGAACCTGTTTTGCGAGAAGATATTCAGAAGATATGGGATTCTGTTCCTAAACCACAGGCCCACAAGGAAACCCCATTAAGTGAATTTTTCAACGTTGAAGTTGTTGCGCTTTCTAGTTATGAAGAAAAGGAAGAGCAATTTAGAGAGCAGGTTGCCAGTTTGCGGCAACGATTCCATCATTCCATTGCTCCTGGTGGGCTTGCAGGGGATCGGCGTGGAGTAGTTCCTGCTTCCGGATTTTCATTTAGTTGTCAGGAAATATGGAAAGTCATTAAGGAGAACAAAGATCTCGACCTTCCTGCACATAAGGTTATGGTTGCTACTGTACGATGTGAAGAAATCACCGACGAGAAATATGCCTCCTTTTCTGCAAATGAGGATTGGTGTCAATTGGAAGAGGCTGTGCAATCTGGCCCTGTTCCTGGATTTGGAAGAAAGCTCAGTTCACTCCTTGGTACTTGTTTATCAGAGTATGATGCTGAAGCTGCCTTTTTTGATGAAGGTGTGAGAACTGCCAAACAAAAGCAACTACAAGAAAAATTGTTCCAACTTGTCCTTCCTGCATTCCAATCTGCGTTGGGACATATAAGATCTGGAACTTTGGATAAATTCAAGGTGGCATTTGACAAGGCTTTGAATGGTGGGGAAGGGTTTTCTGAGGCTGCTAGGAAATGCAGTGAGTTTTGTATGGTTCAATTTGACGAAGCATGTGCAGATATTGTTATCGAACAAGCAAACTGGGATACATCTAAAGTGCGAGAGAAATTGCTGCGGGACATTGATGCACATATTGCAGCTGTGCGTGCAACCAAGATTTCTGAACTCACTTCATCATATGAGGAAAAACTTAAACAAGCTTTGTGTGGACCTGTGGAAGCTCTTTTGGACGGAGCTAATAGTGATACTTGGTCATCAATAAGGAACCTTCTTAGGCGTGAGACTTTATCAGCTGTTTCAGGGTTCTCTACTGCACTTATTGGGTTTGATATGGATGAAGAAACAAGACAGAAAATGCTTAAAAGTTTAGAGGATTATGCAAGAGGTCTGGTAGAAGGAAAGGCTAAGGAAGAAGTAGGAAGAGTTCTAATCCGTATGAAGGATAGGTTTACAATGTTGTTTAGTCATGATGCTGATTCAATGCCTCGTGTTTGGACTGGTAAAGAAGATATACGATCCATCACCAAGACTGCTCGATCTGCTTCTTTGAAGTTGCTATCTGTCATGGCTGCAATCCGTTTGGATGATGACGACGCTGACAATATTGAGAAAGTGTTAGCCGTTGCTTTGGTGGAACCATCGCCAAGCAGTAATGGTACAAGGAGCATGACAGTGGTTGATCCACTAGCTTCTAGCAGCTGGGAAGAGGTTTCTTCCTCTAAAACGTTGATTACGCCTGTCCAGTGCAAGTCTTTGTGGAGGCAATTCAGGACAGAGACAGAGTACACTGTCTCTCAAGCCATTGCTGCACAGGAAGCAAGCAAGCGCAACAACAACTGGTTACCTCCCCCTTGGGCGATAGCTGCTATGGTTATCCTAGGATTTAATGAATTTATGACACTTCTAAGAAATCCCTTGTATTTGGGTGTCATCTTTGTTGGTTATCTTCTTATTAAAGCTCTATGGGTGCAACTTGACATTTCGGGAGAATTTCGCAATGGAGCCCTTCCGGCAATCATTTCCTTGTCTACCAAGTTTGTTCCAACTATCATGAACCTTATGAAAAAACTAGCAGAGGAGGGACAGAATCATGCAGCTAACAATCCTCAGAGAACCCCATCAAAAAACAGTTACAGTGACAGTCACGCCGTGTCGTCAAGCGCCTCATCTAACCTGACTGCATTGGACAACGGAAGGGAGTATGAGGACCCAGTTAAAGATGAGTAG 2427 0.4289 MADRESCCSTQLIDGDGVFNVSGVENFMKEVKLAECGLSYAVVSIMGPQSSGKSTLLNNLFGTNFREMDAFKGRSQTTKGIWMARCNGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHKETPLSEFFNVEVVALSSYEEKEEQFREQVASLRQRFHHSIAPGGLAGDRRGVVPASGFSFSCQEIWKVIKENKDLDLPAHKVMVATVRCEEITDEKYASFSANEDWCQLEEAVQSGPVPGFGRKLSSLLGTCLSEYDAEAAFFDEGVRTAKQKQLQEKLFQLVLPAFQSALGHIRSGTLDKFKVAFDKALNGGEGFSEAARKCSEFCMVQFDEACADIVIEQANWDTSKVREKLLRDIDAHIAAVRATKISELTSSYEEKLKQALCGPVEALLDGANSDTWSSIRNLLRRETLSAVSGFSTALIGFDMDEETRQKMLKSLEDYARGLVEGKAKEEVGRVLIRMKDRFTMLFSHDADSMPRVWTGKEDIRSITKTARSASLKLLSVMAAIRLDDDDADNIEKVLAVALVEPSPSSNGTRSMTVVDPLASSSWEEVSSSKTLITPVQCKSLWRQFRTETEYTVSQAIAAQEASKRNNNWLPPPWAIAAMVILGFNEFMTLLRNPLYLGVIFVGYLLIKALWVQLDISGEFRNGALPAIISLSTKFVPTIMNLMKKLAEEGQNHAANNPQRTPSKNSYSDSHAVSSSASSNLTALDNGREYEDPVKDE* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0249 808 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 277 IPR027417 -
Vra9g0249 808 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 37 252 IPR030386 GO:0005525
Vra9g0249 808 CDD GBP 36 239 - -
Vra9g0249 808 Coils Coil 218 238 - -
Vra9g0249 808 Hamap Protein SEY1 [SEY1]. 9 765 IPR008803 -
Vra9g0249 808 Pfam Sey1 three-helix bundle domain 323 760 IPR046758 -
Vra9g0249 808 PANTHER PROTEIN ROOT HAIR DEFECTIVE 3 HOMOLOG 5 786 - -
Vra9g0249 808 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 46 281 - -
Vra9g0249 808 PANTHER PROTEIN SEY1 5 786 IPR008803 -
Vra9g0249 808 Gene3D - 20 248 IPR027417 -
Vra9g0249 808 MobiDBLite consensus disorder prediction 762 808 - -
Vra9g0249 808 MobiDBLite consensus disorder prediction 763 796 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0249 Vra-Chr9 1830625 1840472 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0249 K22698 - gmx:100777656 1426.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2528 5 32142370 32151790 Vra9g0249 9 1830625 1840472 PCT