Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2528 ATGCAAATGGCGTCCCAGGACCAATGTTGTTCCACTCAGCTTATTGACGGAGATGGTACAATCAATGTTGCCGGAATCGAAAACTTCATGAAAGAAGTTAAATTAGGTGAATGTGGCCTTTCCTATGCCGTAGTTTCTATAATGGGTCCTCAAAGTAGTGGCAAGAGTACACTCTTAAATTCTTTGTTTAATACCAACTTCAGAGAGATGGATGCATTTAAAGGAAGGTCTCAAACAACCAAAGGAATTTGGATGGCTAAATGTGTTGGCATAGAGCCTTGTACACTTGTGATGGATTTGGAGGGTACAGATGGAAGAGAGCGTGGAGAGGATGACACTGCATTTGAAAAGCAGAGTGCTTTATTTGCTTTGGCTATTTCTGATATAGTGCTAATAAACATGTGGTGCCATGACATTGGCCGCGAACAAGCTGCAAATAAGCCTCTTTTAAAAACTGTGTTTCAGGTCATGATGAGATTGTTTAGTCCACGCAAAACAACAATGCTGTTTGTCATACGTGACAAGACAAAGACACCGCTTGAAAATTTAGAGCCTGTTTTGCGAGAAGATATTCAGAAGATATGGGACTCTGTTCCTAAACCAGAGGCCCATAAGGAAACCCCATTAAGTGATTTTTTCATTGTTGAAGTTGTTGCTCTTTCTAGTTTCGAAGAAAAGGAAGAACAATTTAAGGAACAGGTTGCCAACTTGAGGAAACGATTCCAGCATTCTATCGCTCCAGGTGGCCTTGCAGGGGATCGGCGTGGAGTAGTTCCTGCTTCTGGCTTTTCTTTTAGTGCTCAAGAAATCTGGAAAATCATTAAGGAGAATAAGGATCTCGACCTTCCCGCACACAAGGTCATGGTTGCTACTGTTCGATGTGAAGAAATTGCTAATGAGAAATATGACCTTCTTGTTTCAAATAAGGACTGGTGTGAGTTGAAAGAGGCTGTGCAATCTGGCCCTATTTCTGGTTTTGGGAAAAATCTCAATTCACTCCTTACCACTTGTCTTTCAGAATATGATGCTGAAGCCAATTATTTTGACGAAGGTGTCAGAACGGCAAAACAAAAGCAACTCCAAGAAAAACTGTTGCAACTTGTCCAACCAGCATTCCAAATTGCGCTAGGACATGTAAGGTCCAAAGCTTTTGATAAGTTTAAGGCAGCATTTGACAAGGCTTTGAATGGAGGGGAAGCGTTTTCTTCTGCTGCTAATACATGCGTGGAGTCTTGTATGGCTAAGTTTGATGAAGGATGTGCAGATGTTGTCATTGAAATAGCTGACTGGGATACATCTAAAGTGAGGGAGAAGCTGCGGCGTGATGTTGATGCACATGTCTCATCTGTCCGTGCATCTAAGATATCAGAACTAGTTTCATCATATGAGGAAAAACTGAAGGAGGCATTATCTGCACCTGTTGAAACTCTATTGGATGGAGCTAATAATGATACTTGGTCATCGATAAGGAAACTTCTTAATCGTGAGACTCTATCAGCTGTTTCTGGGTTCTCTGCAGAACTTGACAGATATGATATGGATGAAGAAACAAAAAAGAGCATGATTGTGACTTTAGAGGATTATGCAAAGGGTGTGATAGAAGCCAGGGCTAGGGAAGAGGCTAGCAGAGTTCTAATCCGTATGAAGGACAGGTTTATGACATTGTTTAGTCATGATTCTGATTCAATGCCTCGTATTTGGACGGGTAAAGAAGATATTCGAGCCATCACAAAGTCTTCCCGCTCTGAATGCTTGAAGTTGCTGTCTGTAATGGCTGTACTTCGTTTGGCTGATGCTGATGATATTTATGATATAGAGAAAACATTAACAGTCGCATTGGCAGATTCATCAAGCGATTCTGGTAAAGATAAGAGCATCACGACACTCGATCCACTGGCTTCAAGCACTTGGGAGCAGGTTCCAACCTCTAAAACATTGATCACTCCTGTCCAGTGCAAATCATTGTGGAAGCAATTCAAGACAGAGACAGAATATACTGTCTCTCAGGCCATTGCTGCACAGGAAGCCAACAATCGTAGCAACAATTGGTTACCTCCACCATGGGCAATTGTTGCTCTGCTTATTCTTGGATTTAATGAATTTATGACAATTTTAAGAAATCCCTTGTATATAGGTGTCATCTTTGTTGGCTATCTTCTCTTGAAATCCCTATGGGTGCAGCTTGACGTTGCAGGAGAATTTCAAAATGGAGCTCTTCCAGGAATCATCTCCTTGTCTAGCAAGTTTGTTCCAGTTGTCATGAACCTTGTGAGAAAACTAGCAGAGGAGGCACAGAATGCTGCAGCCGATGACCATAGTGGAAATTCATCAAAACGCTATGAGAGGCCTGTTCCTTCTGGTAGAATTACATCATCGAGTTCTTCTTCTCGTGTGAATTCTTTGGGTAATAGAACTGACTCGAACGAGTCTATCAGTCCATTAAAAGAAGAGTAG 2454 0.4161 MQMASQDQCCSTQLIDGDGTINVAGIENFMKEVKLGECGLSYAVVSIMGPQSSGKSTLLNSLFNTNFREMDAFKGRSQTTKGIWMAKCVGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAISDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTMLFVIRDKTKTPLENLEPVLREDIQKIWDSVPKPEAHKETPLSDFFIVEVVALSSFEEKEEQFKEQVANLRKRFQHSIAPGGLAGDRRGVVPASGFSFSAQEIWKIIKENKDLDLPAHKVMVATVRCEEIANEKYDLLVSNKDWCELKEAVQSGPISGFGKNLNSLLTTCLSEYDAEANYFDEGVRTAKQKQLQEKLLQLVQPAFQIALGHVRSKAFDKFKAAFDKALNGGEAFSSAANTCVESCMAKFDEGCADVVIEIADWDTSKVREKLRRDVDAHVSSVRASKISELVSSYEEKLKEALSAPVETLLDGANNDTWSSIRKLLNRETLSAVSGFSAELDRYDMDEETKKSMIVTLEDYAKGVIEARAREEASRVLIRMKDRFMTLFSHDSDSMPRIWTGKEDIRAITKSSRSECLKLLSVMAVLRLADADDIYDIEKTLTVALADSSSDSGKDKSITTLDPLASSTWEQVPTSKTLITPVQCKSLWKQFKTETEYTVSQAIAAQEANNRSNNWLPPPWAIVALLILGFNEFMTILRNPLYIGVIFVGYLLLKSLWVQLDVAGEFQNGALPGIISLSSKFVPVVMNLVRKLAEEAQNAAADDHSGNSSKRYERPVPSGRITSSSSSSRVNSLGNRTDSNESISPLKEE* 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2528 817 MobiDBLite consensus disorder prediction 767 817 - -
Vra5g2528 817 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 48 283 - -
Vra5g2528 817 CDD GBP 38 221 - -
Vra5g2528 817 Gene3D - 16 247 IPR027417 -
Vra5g2528 817 PANTHER PROTEIN ROOT HAIR DEFECTIVE 3 HOMOLOG 9 799 - -
Vra5g2528 817 Pfam Sey1 three-helix bundle domain 325 763 IPR046758 -
Vra5g2528 817 Coils Coil 220 240 - -
Vra5g2528 817 Hamap Protein SEY1 [SEY1]. 11 776 IPR008803 -
Vra5g2528 817 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 250 IPR027417 -
Vra5g2528 817 MobiDBLite consensus disorder prediction 786 809 - -
Vra5g2528 817 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 39 254 IPR030386 GO:0005525
Vra5g2528 817 PANTHER PROTEIN SEY1 9 799 IPR008803 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2528 Vra-Chr5 32142370 32151790 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2528 K22698 - gmx:100797516 1343.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2528 5 32142370 32151790 Vra9g0249 9 1830625 1840472 PCT