Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0247 ATGAGCTTCAACAAGCTCATTGTGTGGAATGTGCCTCTGCTCTTGGTGGTGGTGTTTGCATGGTCACTGATCGGTCATGCTTCGGCTTCTGTGTCCTATGACCATAAAGCTATCACCATCAATGGCCAAAGAAGGATACTGCTTTCTGGTTCCATTCACTACCCCAGAAGCACACCTGAGATGTGGCCAGATCTTATTCAGAAGGCAAAGGAAGGAGGTTTGGATGTGATTCAAACTTATGTTTTCTGGAATGGCCATGAGCCTTCGCCCGGCAAATATTACTTTGGGGGAAACTATGATCTGGTGAGGTTCATAAAGCTGGTGCAGCAAGCAGGCCTCTACGTTAACCTCAGAATTGGTCCTTATGTTTGTGCTGAATGGAACTTCGGAGGTTTCCCTGTTTGGCTCAAGTACATTCCAGGTATCAGCTTCAGGACAGACAATGGACCGTTTAAGTTTCAAATGGAAAGATTTACCAGGAAGATTGTGGATATGATGAAAGCAGAAAGGTTATTCGAGTCTCAGGGTGGTCCAATAATTCTATCTCAGATCGAAAATGAATATGGACCTATGGAGTATGAAGTTGGTGCTCCCGGTAGAGCCTACACACAATGGGCAGCTCATATGGCTGTAGGCCTTGGCACTGGGGTTCCATGGATCATGTGCAAGCAAGATGATGCTCCTGATCCTGTTATTAACACTTGCAATGGCTTCTATTGTGATTATTTCTCTCCAAATAAGGCTTACAAACCAAAGATGTGGACAGAGGCTTGGACTGGCTGGTTTACTGAGTTTGGTGGTGCAGTTCCTCAAAGACCTGCTGAAGACTTGGCATTTTCAATTGCAAGGTTTATACAGAAAGGGGGATCATATGTCAACTATTATATGTATCACGGGGGAACAAATTTTGGTCGAACTGCTGGTGGTCCCTTCATTGCTACGAGCTATGATTATGATGCACCTCTTGATGAATATGGATTGGCGAGACAGCCAAAGTGGGGTCATCTGAAAGATTTACATAGAGCAATAAAACTGTGTGAACCTGCTTTAATATCAGGAGATCCTACTGTACAACGGCTTGGGAATTATGAAGAGGCTCATGTCTTTAGATCAAGGTCTGGAGCTTGTGCTGCATTCCTTGCAAACTACAATCCACAATCTTATGCAACGGTGGCATTTGGAAATCAACATTACAATCTGCCTCCTTGGTCTATAAGCATTCTTCCTAACTGCAAGCACACTGTTTATAACACTGCAAGGGTTGGTTCTCAGAGCACAACAATGAAGATGAGTCGTGTTCCTATTCATGGAGGACTGTCTTGGAAAGCGTTTAATGAAGAGACAACCACTACTGATGATAGTTCCTTCACTGTGACTGGCCTGTTGGAGCAGATAAATGCAACCAGAGATTTGTCTGACTACCTGTGGTACTCCACGGATGTTGTGATCAATCCAAATGAAGAATTTTTGAGGAATGGAAAGTATCCCTATCTTACAGTTTTATCTGCTGGGCATGCTTTGCATGTTTTTATCAACAATCAGTTGGCAGGAACTGCATATGGAAGCTTGGAGGCCCCCAAACTAACCTTCAGTGAAAGTGTGAGGCTCAGAGCTGGTGTTAACAAAATCTCCCTTTTAAGTGTTGCAGTTGGGCTTCCGAATGTTGGTCCACATTTTGAAAGATGGAATGCTGGTGTTCTTGGCCCAATAACATTAAGTGGTCTCAATGAAGGGAGAAGAGACTTAACTTGGCAAAAGTGGTCATACAAGGTTGGTCTTAAAGGTGAAGCCTTGAATCTACATTCTCTTAGTGGAAGCTCCTCTGTTGAGTGGCTTCAGGGGTATTTAGTTTCTAGAAGACAGCCGTTGACATGGTACAAAACTACTTTTGATGCCCCAGTTGGAGTTGCACCATTGGCTTTAGACATGGCCAGCATGGGCAAAGGTCAAGTGTGGATAAATGGACAGAATCTGGGCCGCTACTGGCCTGCTTACAAAGCATCCGGTTCTTGTGGTTACTGTAACTATGCAGGGACTTACAATGAGAAAAAATGTGGAAGTAAATGTGGCGAGCCTTCTCAAAGATGGTACCATGTTCCTCATTCTTGGCTGAAGCCAACCGGAAATTTATTGGTTGTGTTTGAGGAATTGGGTGGGGATCCGAATGGGATCTTTTTGGTTAGAAGAGATATTGACAGTGTATGCGCTGATATCTATGAGTGGCAGCCAAATCTTGTTAGTTATGAGATGCAAGCTTCTGGCAAAGTCAAAAGTCCTGTGAGGCCAAAAGCACATTTGTCATGTGGTCCTGGACAAAAAATCTCATCAATCAAGTTTGCTAGCTTTGGCACTCCAGTAGGATCTTGTGGAAGCTACCGTGAAGGAAGTTGTCATGCTCACAAGTCATATGATGCTTTTCAGAAGAATTGTGTTGGGCAAAGCTGGTGCACAGTGACAGTGTCTCCTGAAATTTTTGGAGGAGATCCATGTCCAAGTGTGATGAAGAAGCTCTCAGTGGAAGCCATTTGCACCTGA 2535 0.4402 MSFNKLIVWNVPLLLVVVFAWSLIGHASASVSYDHKAITINGQRRILLSGSIHYPRSTPEMWPDLIQKAKEGGLDVIQTYVFWNGHEPSPGKYYFGGNYDLVRFIKLVQQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGISFRTDNGPFKFQMERFTRKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEVGAPGRAYTQWAAHMAVGLGTGVPWIMCKQDDAPDPVINTCNGFYCDYFSPNKAYKPKMWTEAWTGWFTEFGGAVPQRPAEDLAFSIARFIQKGGSYVNYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLARQPKWGHLKDLHRAIKLCEPALISGDPTVQRLGNYEEAHVFRSRSGACAAFLANYNPQSYATVAFGNQHYNLPPWSISILPNCKHTVYNTARVGSQSTTMKMSRVPIHGGLSWKAFNEETTTTDDSSFTVTGLLEQINATRDLSDYLWYSTDVVINPNEEFLRNGKYPYLTVLSAGHALHVFINNQLAGTAYGSLEAPKLTFSESVRLRAGVNKISLLSVAVGLPNVGPHFERWNAGVLGPITLSGLNEGRRDLTWQKWSYKVGLKGEALNLHSLSGSSSVEWLQGYLVSRRQPLTWYKTTFDAPVGVAPLALDMASMGKGQVWINGQNLGRYWPAYKASGSCGYCNYAGTYNEKKCGSKCGEPSQRWYHVPHSWLKPTGNLLVVFEELGGDPNGIFLVRRDIDSVCADIYEWQPNLVSYEMQASGKVKSPVRPKAHLSCGPGQKISSIKFASFGTPVGSCGSYREGSCHAHKSYDAFQKNCVGQSWCTVTVSPEIFGGDPCPSVMKKLSVEAICT* 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0247 844 SUPERFAMILY Galactose-binding domain-like 585 748 IPR008979 -
Vra9g0247 844 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 176 188 IPR019801 GO:0004553|GO:0005975
Vra9g0247 844 Gene3D Glycosidases 25 346 - -
Vra9g0247 844 Pfam Galactose binding lectin domain 766 843 IPR000922 GO:0030246
Vra9g0247 844 Gene3D - 600 735 - -
Vra9g0247 844 PANTHER BETA-GALACTOSIDASE 8 838 - -
Vra9g0247 844 PRINTS Glycosyl hydrolase family 35 signature 41 58 IPR001944 GO:0004553|GO:0005975
Vra9g0247 844 PRINTS Glycosyl hydrolase family 35 signature 62 80 IPR001944 GO:0004553|GO:0005975
Vra9g0247 844 PRINTS Glycosyl hydrolase family 35 signature 117 136 IPR001944 GO:0004553|GO:0005975
Vra9g0247 844 PRINTS Glycosyl hydrolase family 35 signature 174 189 IPR001944 GO:0004553|GO:0005975
Vra9g0247 844 PRINTS Glycosyl hydrolase family 35 signature 253 268 IPR001944 GO:0004553|GO:0005975
Vra9g0247 844 PRINTS Glycosyl hydrolase family 35 signature 290 305 IPR001944 GO:0004553|GO:0005975
Vra9g0247 844 PRINTS Glycosyl hydrolase family 35 signature 310 326 IPR001944 GO:0004553|GO:0005975
Vra9g0247 844 PRINTS Glycosyl hydrolase family 35 signature 621 635 IPR001944 GO:0004553|GO:0005975
Vra9g0247 844 PRINTS Glycosyl hydrolase family 35 signature 648 664 IPR001944 GO:0004553|GO:0005975
Vra9g0247 844 Pfam Beta-sandwich domain in beta galactosidase 350 421 IPR041392 -
Vra9g0247 844 PANTHER BETA-GALACTOSIDASE RELATED 8 838 IPR001944 GO:0004553|GO:0005975
Vra9g0247 844 SUPERFAMILY Galactose-binding domain-like 405 576 IPR008979 -
Vra9g0247 844 ProSiteProfiles SUEL-type lectin domain profile. 758 844 IPR000922 GO:0030246
Vra9g0247 844 Pfam Glycosyl hydrolases family 35 38 342 IPR031330 -
Vra9g0247 844 SUPERFAMILY (Trans)glycosidases 30 347 IPR017853 -
Vra9g0247 844 Gene3D - 754 844 IPR043159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0247 Vra-Chr9 1811826 1818279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0247 23 843 Glycoside Hydrolase AT3G13750 80.146 0.0 1414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0247 - - gmx:100785688 1712.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0247 9 1811826 1818279 Vra9g0247 9 1811826 1818279 ECH
Vra5g2525 5 32123517 32129619 Vra9g0247 9 1811826 1818279 PCT