Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2525 ATGGTGATGTGCTTCAAGCTCGTAATATGGAGCTGGGTGCTGCTTCTTGTTTGTTCTCTCACTGGTTCTGCTGAGGCCTCAGTGTCTTATGACTCAAAGGCTATCACCATTAATGGCCAGAGAAGGATCCTCATTTCTGGATCCATTCATTACCCAAGGAGCACCCCTGAGATGTGGCCAGATCTTATTCAGAAGGCCAAGGAGGGAGGGTTGGATGTGATTCAGACTTATGTTTTCTGGAATGGGCACGAGCCTTCACCTGGCAAGTATTATTTTGAGGGGAACTATGACCTGGTGAAGTTCATAAAGCTGGTGCAGCAAGCGGGCCTTTATGTTCATCTCAGGATTGGTCCTTATGTCTGTGCTGAGTGGAACTTTGGGGGTTTCCCTGTTTGGCTAAAGTACATTCCAGGAATCAGCTTCAGAACAGACAATGAACCTTTTAAGAATCAAATGCAAAAGTTTACCACGAAGATTGTTGATTTGATGAAAGCGGAGAGGTTATACGAGTCTCAGGGAGGTCCAATAATTATGTCACAGATTGAAAATGAATATGGACCTGTAGAGTATGAAATTGGTGCTGCGGGTAAATCTTATACAAAATGGGCAGCAGAGATGGCTATGGGACTTGGTACTGGGGTTCCATGGATCATGTGCAAGCAGGATGATACTCCTGATCCTCTTATTAACACTTGCAATGGCTTCTACTGTGATTATTTCTCTCCAAACAAGGCTTACAAGCCAAAGATGTGGACAGAAGCTTGGACTGGCTGGTTTACGGAGTTTGGAGGTCCAGTTCCTTATCGACCTGCTGAAGACTTAGCATTTTCAGTTGCAAGGTTTCTACAGAAAGGAGGATCATTTGTAAACTATTACATGTATCATGGGGGAACAAACTTCGGTCGAACTGCCGGTGGTCCCTTTATTGCAACAAGCTATGATTATGATGCACCACTTGATGAATATGGATTGCTCAGACAACCAAAGTGGGGTCATCTGAAGGATTTACACAGAGCAATAAAAATGTGTGAACCAGCCTTAGTATCAGGAGATCCTACTGTAACAAATCTTGGAAACTATCAAGAGGCTCATGTGTTTAAAGCAAAGTCAGGAGCTTGTGCTGCATTCCTTGCAAACTATAACCCAAAATCTTATGCAACAGTGGCCTTTGGAAGTATGCATTACAACTTGCCTCCTTGGTCTATAAGCATTCTTCCTGACTGCAAGCACACTATTTATAACACTGCAAGGGTCGGTTCTCAGAGTGCCCAGATGAAGATGACTGGTGTTCCTATTCATGGCGGACTCTCCTGGCTATCATTCAATGAAGAAACTACTACTACTGAGGATAGTTCCTTCACCATGACTGGCCTGTTAGAGCAGTTAAATACAACAAGAGATTTATCTGACTACTTGTGGTACTCTACAGATGTTGTGCTTGATTCCGGAGAAGGGTTTCTGACAAACGGAAAGGATCCTATTCTTACCGTGTTTTCAGCTGGGCATGCTTTGCATGTTTTTATAAATGGTCAACTATCAGGAACTTCATATGGAAGCTTAGAATTCCCTAAACTGACATTTAGTCAAGGAGTGAAGCTCAGAGTCGGTATTAACAAGATCTCTCTTCTAAGTGTTGCAGTCGGACTCCCGAATGTTGGACCTCATTTTGAAACATGGAATGCCGGTGTTCTTGGCCCAATATCATTAAGTGGTCTCAACGAAGGGAGAAGGGACTTGTCTTGGCAGAAATGGTCTTACAAGGTTGGTCTTAAAGGTGAAACCTTGAGTCTCCATTCTATCAGTGGAAGTTCCTCAGTGGAGTGGATTGAGGGATCTTTATTTTCTAGAAGACAGCCTTTGACTTGGTACAAAACAACTTTCGATGCACCAGCTGGCACCGCACCATTGGCTTTAGACATGGGGAGCATGGGTAAGGGTCAAGTATGGTTAAATGGACAGAATCTTGGCCGCTACTGGCCTGCTTATAAGGCTTCTGGTACCTGTGATTATTGTGACTATGCTGGAACTTACAATGAGAATAAATGCAGAAGCAACTGTGGCGAGGCCTCTCAAAGATGGTATCATGTTCCTCAGTCATGGCTAAAGCCCACAGGAAATTTATTGGTTGTGTTTGAAGAGCTAGGTGGAGATCCGGATGGAATCTTTTTGGTTAGAAGGGATATAGATAGTGTTTGTGCTGATATTTATGAGTGGCAGCCTAACCTTATAAGTTATCAGATGCAAGTTGCTGGCAAACCACCTGTGAGACCAAAAGTTCATTTATCATGTAGCCCTGGACAGAAAATCTCATCCATCAAATTTGCCAGCTTTGGTACTCCACTGGGTTCTTGTGGAAACTTCCATGAAGGAAGCTGTCATGCTCACAAGTCTTATGATGCATTTCAAAGGAATTGTGTTGGACAAAACTGGTGCGCAGTAACAGTGTCACCTGAAAATTTTGGAGGAGATCCATGTCCAAATGTCATGAAGAAACTCTCAGTGGAAGCTATTTGTTCCTGA 2520 0.4337 MVMCFKLVIWSWVLLLVCSLTGSAEASVSYDSKAITINGQRRILISGSIHYPRSTPEMWPDLIQKAKEGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLVQQAGLYVHLRIGPYVCAEWNFGGFPVWLKYIPGISFRTDNEPFKNQMQKFTTKIVDLMKAERLYESQGGPIIMSQIENEYGPVEYEIGAAGKSYTKWAAEMAMGLGTGVPWIMCKQDDTPDPLINTCNGFYCDYFSPNKAYKPKMWTEAWTGWFTEFGGPVPYRPAEDLAFSVARFLQKGGSFVNYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKMCEPALVSGDPTVTNLGNYQEAHVFKAKSGACAAFLANYNPKSYATVAFGSMHYNLPPWSISILPDCKHTIYNTARVGSQSAQMKMTGVPIHGGLSWLSFNEETTTTEDSSFTMTGLLEQLNTTRDLSDYLWYSTDVVLDSGEGFLTNGKDPILTVFSAGHALHVFINGQLSGTSYGSLEFPKLTFSQGVKLRVGINKISLLSVAVGLPNVGPHFETWNAGVLGPISLSGLNEGRRDLSWQKWSYKVGLKGETLSLHSISGSSSVEWIEGSLFSRRQPLTWYKTTFDAPAGTAPLALDMGSMGKGQVWLNGQNLGRYWPAYKASGTCDYCDYAGTYNENKCRSNCGEASQRWYHVPQSWLKPTGNLLVVFEELGGDPDGIFLVRRDIDSVCADIYEWQPNLISYQMQVAGKPPVRPKVHLSCSPGQKISSIKFASFGTPLGSCGNFHEGSCHAHKSYDAFQRNCVGQNWCAVTVSPENFGGDPCPNVMKKLSVEAICS* 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2525 839 PANTHER BETA-GALACTOSIDASE RELATED 13 833 IPR001944 GO:0004553|GO:0005975
Vra5g2525 839 PRINTS Glycosyl hydrolase family 35 signature 38 55 IPR001944 GO:0004553|GO:0005975
Vra5g2525 839 PRINTS Glycosyl hydrolase family 35 signature 59 77 IPR001944 GO:0004553|GO:0005975
Vra5g2525 839 PRINTS Glycosyl hydrolase family 35 signature 114 133 IPR001944 GO:0004553|GO:0005975
Vra5g2525 839 PRINTS Glycosyl hydrolase family 35 signature 171 186 IPR001944 GO:0004553|GO:0005975
Vra5g2525 839 PRINTS Glycosyl hydrolase family 35 signature 250 265 IPR001944 GO:0004553|GO:0005975
Vra5g2525 839 PRINTS Glycosyl hydrolase family 35 signature 287 302 IPR001944 GO:0004553|GO:0005975
Vra5g2525 839 PRINTS Glycosyl hydrolase family 35 signature 307 323 IPR001944 GO:0004553|GO:0005975
Vra5g2525 839 PRINTS Glycosyl hydrolase family 35 signature 618 632 IPR001944 GO:0004553|GO:0005975
Vra5g2525 839 PRINTS Glycosyl hydrolase family 35 signature 645 661 IPR001944 GO:0004553|GO:0005975
Vra5g2525 839 Gene3D - 594 731 - -
Vra5g2525 839 ProSiteProfiles SUEL-type lectin domain profile. 753 839 IPR000922 GO:0030246
Vra5g2525 839 Pfam Galactose binding lectin domain 761 838 IPR000922 GO:0030246
Vra5g2525 839 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 173 185 IPR019801 GO:0004553|GO:0005975
Vra5g2525 839 Gene3D Glycosidases 24 344 - -
Vra5g2525 839 Pfam Beta-sandwich domain in beta galactosidase 347 418 IPR041392 -
Vra5g2525 839 SUPERFAMILY (Trans)glycosidases 28 344 IPR017853 -
Vra5g2525 839 Gene3D - 755 839 IPR043159 -
Vra5g2525 839 PANTHER BETA-GALACTOSIDASE 13 833 - -
Vra5g2525 839 SUPERFAMILY Galactose-binding domain-like 582 744 IPR008979 -
Vra5g2525 839 Pfam Glycosyl hydrolases family 35 35 339 IPR031330 -
Vra5g2525 839 SUPERFAMILY Galactose-binding domain-like 402 573 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2525 Vra-Chr5 32123517 32129619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2525 15 839 Glycoside Hydrolase AT3G13750 79.807 0.0 1417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2525 - - gmx:100811187 1672.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2525 5 32123517 32129619 Vra5g2525 5 32123517 32129619 ECH
Vra5g2525 5 32123517 32129619 Vra9g0247 9 1811826 1818279 PCT