Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0202 ATGTTTTCCTACTCCAGTTTTAGTTTCCCTCCTTTCCTACTTCGCAGGGCAGATCCAAGAGTAAGTGCAAGCTTTAACATTGACACCCCGCAGGACCCCAATTCAACCAGCCCTCATGGCTCGAATGCTAATTTTGATGAAGAATTTCGAAAGGGAAAGGAAAGAGGGAGAGTGATGGGTGGTAGTGATGGTGGTGGTGGGGTTGTTATTGGGAGGAAGAAGAAGTCGAAGGAGAAAGTTGAATGGGTTTGCAGCAATTGTGGGTACAGTGCAGGACAATGGTGGGGCGTGTGCCGTTCATGCAATGTATCTGGAACTATGAAAGAGGCCAAATTCAGTAGTGATGCTGGTACTGTGATTAGTGGGTTTTCAGTATTGGAAGATGGTGTTGGGTCTTGGCTACCGCAACAGGAAGGAGAGTTACGTCCCTTGAGATTGGCAGAGGTAAACAGGGGCATTGATCATCACCATTGGAGAATTCCTTTGTCTGGTCCCTTCGGAAATGAAGTTTGCAGAGTGCTTGGTGGTGGTCTCATACCAGGCTCCTTGACTTTAATTGGTGGTGATCCCGGTGTTGGGAAGAGTACTCTTTTGCTGCAGCTTCAATCATTGCAGAAGGGCACCATAATAGTAAAGCATCTCCAGTTGTATATGTCTCTGGTGAAGAGAGTGTTGAGCAAATTGGTAACAGAGCGGATCGTCTTAGGATTCAATCAGATATTTATTTATATTCAAGATATATTGAAGAAAGTTCAGCATCTCTCTCCTGGGGCTCTAATTGTTGATTCAATACAAACTGTTTATTTAAAAGGAATAATGGGAAGTCCTGGAGGGATTATGCAGGTGAAAGAATGCACTTCAGCTTTACTTCGATTTGCAAAGAAGACAAACATCCCAGTTCTTCTGATTGGACATGTGACAAAATCTGGAGACATTGCAGGACCTCGAGTTTTGGAGCATATTGTTGATGTTGTTCTGTATATGGAAGGTGAGAAGTACACTTCCCATCGTATGCTTCGAGCTGTGAAAAATCGATTTGGATCCACGGATGAGCTTGGAGTTTTTGAGATGTCACATTCAGGACTTCAGGCTATTTCAAATGCCAGTAAAATGTTTCTCAGTGAGCAACATCTGGATTCAGAAATTTTAGCTGGACTAGCTGTTGCTGTAATCATGGATGGGTCCCGGACATTTCTTATTGAAATCCAGGCACTTTGTCTTTCTAGTTCAACAGGTTCAAGGCAAGTTAATGGTATCCAACTAAATAGAGCTGATATGATCATATCCGTTCTTATAAAACAAGCTGGTCTTCGTCTCCGAGAACATGCTGTATTTTTGAATGTTGTTAGTGGATTGACACTGGCTGAGACTGCTGGAGATCTTGCTATAGCAGCAGCAATTTGCAGCAGTTGCTTGGAAATCCCAATTCCAAATGACATTGCATTCATTGGTGAAATTGGCCTCGGTGGTGAGCTTCGCATGGTTCATAGAATGGATAAAAGGGTATATACCGTTGCGAAATTGGGTTTCAGAATGTGCATAGTACCAAAGGTTGCTGAGAAAGCTTTAGGAACTGAAGGTCTAGAAAAGATGAAAGTTGTTGGTTGCAGGAATCTGAAAGAGGTTATTAACACTGTATTTCCCAATATAATGATGAAAAGGAGGTAG 1668 0.4263 MFSYSSFSFPPFLLRRADPRVSASFNIDTPQDPNSTSPHGSNANFDEEFRKGKERGRVMGGSDGGGGVVIGRKKKSKEKVEWVCSNCGYSAGQWWGVCRSCNVSGTMKEAKFSSDAGTVISGFSVLEDGVGSWLPQQEGELRPLRLAEVNRGIDHHHWRIPLSGPFGNEVCRVLGGGLIPGSLTLIGGDPGVGKSTLLLQLQSLQKGTIIVKHLQLYMSLVKRVLSKLVTERIVLGFNQIFIYIQDILKKVQHLSPGALIVDSIQTVYLKGIMGSPGGIMQVKECTSALLRFAKKTNIPVLLIGHVTKSGDIAGPRVLEHIVDVVLYMEGEKYTSHRMLRAVKNRFGSTDELGVFEMSHSGLQAISNASKMFLSEQHLDSEILAGLAVAVIMDGSRTFLIEIQALCLSSSTGSRQVNGIQLNRADMIISVLIKQAGLRLREHAVFLNVVSGLTLAETAGDLAIAAAICSSCLEIPIPNDIAFIGEIGLGGELRMVHRMDKRVYTVAKLGFRMCIVPKVAEKALGTEGLEKMKVVGCRNLKEVINTVFPNIMMKRR* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0202 555 PRINTS DNA repair protein radA signature 84 108 - -
Vra9g0202 555 PRINTS DNA repair protein radA signature 172 200 - -
Vra9g0202 555 PRINTS DNA repair protein radA signature 262 286 - -
Vra9g0202 555 PRINTS DNA repair protein radA signature 301 329 - -
Vra9g0202 555 PRINTS DNA repair protein radA signature 336 362 - -
Vra9g0202 555 PRINTS DNA repair protein radA signature 411 434 - -
Vra9g0202 555 ProSiteProfiles RecA family profile 1. 159 306 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Vra9g0202 555 PANTHER DNA REPAIR PROTEIN RADA 65 547 - -
Vra9g0202 555 TIGRFAM sms: DNA repair protein RadA 77 542 IPR004504 GO:0003684|GO:0005524|GO:0006281
Vra9g0202 555 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 378 IPR027417 -
Vra9g0202 555 MobiDBLite consensus disorder prediction 24 43 - -
Vra9g0202 555 Gene3D - 204 369 IPR027417 -
Vra9g0202 555 Pfam Subunit ChlI of Mg-chelatase 428 517 - -
Vra9g0202 555 MobiDBLite consensus disorder prediction 24 46 - -
Vra9g0202 555 SMART AAA_5 180 332 IPR003593 -
Vra9g0202 555 Gene3D - 168 203 IPR027417 -
Vra9g0202 555 Gene3D - 382 554 IPR014721 -
Vra9g0202 555 Pfam Rubredoxin metal binding domain 82 109 IPR041166 -
Vra9g0202 555 SUPERFAMILY Ribosomal protein S5 domain 2-like 343 547 IPR020568 -
Vra9g0202 555 PANTHER DNA REPAIR-LIKE PROTEINRADA 65 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0202 Vra-Chr9 1414693 1421794 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0202 K04485 - gmx:100794165 837.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0202 9 1414693 1421794 Vra9g0202 9 1414693 1421794 ECH
Vra5g2490 5 31857594 31868659 Vra9g0202 9 1414693 1421794 PCT