Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2490 ATGACCAGGCTCCTTAGAACCATCCTCATCGCACACAAGCTTCACCTTCACTACTCCAAATGCATTTTCCGACCTCTCCTTTCCCACTACTCTGCAACGGCGGATTCTTCCGATGCTGACCTCACACACAAACCAACTAATGAAACCACTACCACCGGTTGGAGCAGGTATGGGAACATCTACGCCCACCCAGTTGTGCAGCCAAGCGATCACAGCGATGGAGATGAAAACCCTAGCGGTTTGAGGGGAAATGATGCAGCGGTGGTGAAGAAAAAGGGGAAGGTGAAAGCTCAGTGGGTGTGCTCTGATTGTGGGCACACGACGGGGAGATGGTGGGGGACATGCCCCGAGTGCGATGTAACTGGCACAATGCAAGAGTTTCACGAGAGCAAATTAACTGACAAATCCAGAGGGGGGTTAGCCATTACCGACGACGCAGTGCGCTCGTGGCTCCCACGACGACCTGAAGAGCTGCGCCTCGTCAAATTGGAAGAGGTGAACCGTGGATTCAATCACGAGAAATGGAGAATTCCTTTGTCTGGTTCCCTCGGAAATGAAGTTTCTACAGTGCTTGGTGGAGGTCTTGTACCAGGTTCTTTAACTTTAGTAGGTGGTGATCCTGGTATCGGGAAAAGTACTCTGTTGTTACAGATTTCAGCAATGATAGCAAATACGTGCAGTGATGATGAAACACCTCCAGTTGTATATGTGTCTGGTGAAGAGAGCCTTAAGCAAATTTGTGCTAGAGCCGATCGCCTTGGGATTAAGTCCAATATTTATTTATATTCAAGTACTGATATTGAGGACATATTGAGGAAAACTCATGCTCTATCCCCTTGTGCTCTGGTGGTTGATTCAATACAAACTGTTTACCTGAATACAGTAATAGGAAGTGCTGGAGGGATTACGCAGGTGAAGGAATGTACGGCAGCTTTGATGCGATTTGCTAAAACAACTAACATCTCAGTTATTTTGATTGGACATGTGACCAAATCTGGAGAGATAGCAGGACCTCGAGTCTTGGAGCATATAGTTGATGTTGTTTTGTATATGGAAGGTGAGAAGCACTCTCCATATCGAATGCTGCGAGCTGTGAAAAATCGCTTTGGTTCCACTGATGAGCTTGCTGTTCTTGAGATGTCACAATCAGGACTCCAGGTTGTTTCAAATGCCAGTGAAATGTTTCTCACTCAACAGCATTCTGATTCAAATGTTTTAGCCGGACTTGCTATTGCTGTATTAATGGATGGTACAAGAACATTTTTAGTTGAAATTCAGGCACTATGCCTCACATATAGCCCAGTTTCGAGTTCACAATCCAATGGGATCCATTCAAACAGAGCTAATATTATTAAATGTGTACTTATTAAGCAAGCAGGTCTTCATCTCCAGGATAATGCTGTGTTTTTGAATGTTGTTGGTGGATTCCAAGTGACAGAGACTGCTGGAGATCTTGCAATAGCAGCTGCAATTTGCAGCAGTTTCTTGGAGTTCCCTATTCCAGAGGGGACTGCGTTCATTGGTGAAATTGGCCTTGGTGGAGAGCTTCGCATGGTTCCTAGAATTGATAAAAGGGTTAACACAGTGGCGAAGTTGGGTTACAGAATGTGTGTCGTACCAAAGCAAGCTGTAAAACTTCTAGAAACCGAAGGTCTGGAAGGAATAAAAGTTGTAGGTTGCAAGGATCTGAAAGAGGTTATTAACACCGTATTTAGTAAAGTAATAGTTAACTGA 1734 0.4469 MTRLLRTILIAHKLHLHYSKCIFRPLLSHYSATADSSDADLTHKPTNETTTTGWSRYGNIYAHPVVQPSDHSDGDENPSGLRGNDAAVVKKKGKVKAQWVCSDCGHTTGRWWGTCPECDVTGTMQEFHESKLTDKSRGGLAITDDAVRSWLPRRPEELRLVKLEEVNRGFNHEKWRIPLSGSLGNEVSTVLGGGLVPGSLTLVGGDPGIGKSTLLLQISAMIANTCSDDETPPVVYVSGEESLKQICARADRLGIKSNIYLYSSTDIEDILRKTHALSPCALVVDSIQTVYLNTVIGSAGGITQVKECTAALMRFAKTTNISVILIGHVTKSGEIAGPRVLEHIVDVVLYMEGEKHSPYRMLRAVKNRFGSTDELAVLEMSQSGLQVVSNASEMFLTQQHSDSNVLAGLAIAVLMDGTRTFLVEIQALCLTYSPVSSSQSNGIHSNRANIIKCVLIKQAGLHLQDNAVFLNVVGGFQVTETAGDLAIAAAICSSFLEFPIPEGTAFIGEIGLGGELRMVPRIDKRVNTVAKLGYRMCVVPKQAVKLLETEGLEGIKVVGCKDLKEVINTVFSKVIVN* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2490 577 Gene3D - 186 388 IPR027417 -
Vra5g2490 577 SMART AAA_5 197 355 IPR003593 -
Vra5g2490 577 MobiDBLite consensus disorder prediction 65 84 - -
Vra5g2490 577 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 379 IPR027417 -
Vra5g2490 577 PANTHER DNA REPAIR-LIKE PROTEINRADA 3 573 - -
Vra5g2490 577 Pfam AAA domain 190 333 - -
Vra5g2490 577 SUPERFAMILY Ribosomal protein S5 domain 2-like 366 571 IPR020568 -
Vra5g2490 577 TIGRFAM sms: DNA repair protein RadA 94 566 IPR004504 GO:0003684|GO:0005524|GO:0006281
Vra5g2490 577 ProSiteProfiles RecA family profile 1. 173 329 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Vra5g2490 577 PANTHER DNA REPAIR PROTEIN RADA 3 573 - -
Vra5g2490 577 Pfam Subunit ChlI of Mg-chelatase 456 542 - -
Vra5g2490 577 Gene3D - 397 576 IPR014721 -
Vra5g2490 577 Pfam Rubredoxin metal binding domain 99 126 IPR041166 -
Vra5g2490 577 PRINTS DNA repair protein radA signature 101 125 - -
Vra5g2490 577 PRINTS DNA repair protein radA signature 189 217 - -
Vra5g2490 577 PRINTS DNA repair protein radA signature 285 309 - -
Vra5g2490 577 PRINTS DNA repair protein radA signature 324 352 - -
Vra5g2490 577 PRINTS DNA repair protein radA signature 359 385 - -
Vra5g2490 577 PRINTS DNA repair protein radA signature 435 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2490 Vra-Chr5 31857594 31868659 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2490 K04485 - gmx:100791181 919.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2490 5 31857594 31868659 Vra5g2490 5 31857594 31868659 ECH
Vra5g2490 5 31857594 31868659 Vra9g0202 9 1414693 1421794 PCT