Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0182 ATGGATGGGAATTTCACCAGAAGCATAAGCAGGAGCATAAGCAGATCAAGCTGGAGAATGGAGGAGGTGTTTGCGAGTGGAAGGTATTCTCGCAGAACTTCTCAAGTTGATGAAGATGAAGAGGCTCTCAAATGGGCTGCCATAGAGAAACTCCCCACCTATGACAGATTAAGGACGAGCATCATCCAAACCTTTGCCGAAGGTGGTGAGCAACAACCTGGGAACCAAGTTCTGCACAAGGAAGTTGATGTTCGCAAGCTAGACATGAATGATAGACAACAAATCATTGACAAGATTTTCAAGGTTGCCGAAGAAGACAATGAAAAGTTTCTCAGGAAGTTCAGGAACAGAATCGACAAGGTGGGGATCAGACTTCCAACGGTAGAAGTGAGGTTCCAAAATTTGACTATCGAGGCAAATTCCTTTGTCGGCAGCAGAGCTCTGCCAACCCTGCCAAACTCTGCATTGAACATTCTTGAATCATTTTTTGGTATGTGTGGCATTAGTACAGCTAAGAGGACAAAGCTCACTATTCTTAAGAATGCCTCAGGCATTGTTAAACCATCAAGGATGGCCCTTTTATTAGGTCCCCCATCTTCAGGGAAAACGACCCTTTTGTTGGCATTGGCCGGAAAATTGGACCCTGAATTGAAGGTAAAGGGAGAAATCACTTACAATGGACACAAACTTGATGAGTTTGTGCCAAGAAAGACTTCAGCATATATTAGCCAAAATGATGTTCATGTTGGAGAAATGACTGTAAAAGAAACACTGGATTTCTCAGCTAGATGTCTAGGAGTAGGGACTAGATATGATCTATTAACCGAGCTTGCTAGAAGGGAAAAGGAAGCTGGCATATTTCCAGAGGCAGATGTTGACCTTTTCATGAAGGCCACTGCAATGGAAGGAACAGAAAGCAGTCTCATCACCGACTACACACTCAAAATACTGGGGCTTGATATTTGCAAGGATACCATAGTGGGTGATGAAATGCACAGAGGTGTATCAGGTGGCCAAAAGAAGCGTGTTACCACAGGAGAGATGATTGTTGGACCCACAAAAACACTATTCATGGATGAAATATCAACGGGTCTTGATAGTTCCACAACTTATCAGATTGTGAAGTGCTTGCAGCAGATTGTGCACCTCACTGAAGCAACTATCTTAATGTCCCTTCTCCAACCTGCTCCTGAGACTTTCAATCTGTTTGATGACATCATCCTCATTTCTGAGGGTCAGATTGTATACCAGGGCCCACGTGAGCACATCGTGGAATTCTTTGAGTCATGTGGGTTTCGCTGTCCCGAAAGAAAAGGAACCGCTGATTTCTTGCAAGAGGTTACCTCAAGGAAGGACCAGGAGCAATACTGGGCAGACAAAAACAGGCCATACCGTTATGTTACAGTGACAGAGTTTGCAAACAAGTTCAAGCGGTTCCATGTTGGAATGAGGCTTGAGAGTGAGTTGAATGTGCCATTTGATAAATCAAGTGCACATAAAGCAGCTCTTGTATACAGTAAAAACTCTGTGCCCACAATGGATCTTTTTAAAGCATGTTGGGACAAGGAGTGGCTGCTGATTAAGAGGAACTCCTTCGTCTACATATTCAAGACAGTCCAAATTATCATCATTGCCATCATATCTGCAACATTGTTCTTGAGGACTGAAATGGACCAAAGTAATGAAGATGGTGCTTCACTCTACATTGGTGCCATTTTGTTCTCTATGATCATGAACATGTTTAATGGTTTTGCTGAGCTAGCACTCACAATTGGAAGGCTTCCCGTGTTTTACAAGCACAGAGACCATCTTTTCCACCCTGCTTGGACTTACACCCTCCCCAATTTCTTGTTACGTATTCCCATTTCTGTTTTTGAGTCTCTTGCTTGGGTGGGTGTCACCTACTACACCATAGGATTTGCTCCTGAAGCTAGCAGGTTCTTCAAGCAACTGTTGGCGGTGTTTCTTATCCAACAAATGGCAGCTGGCATGTTTAGGTTCATTTCTGGAGTGTGCAGAACAATGATTATAGCTAACACTGGTGGAGCCCTCATGCTCCTTCTTGTTTTCCTGCTTGGAGGTTTCATCCTTCCCAAACGTGAAATTCCTGATTGGTGGGTGTGGGCTTACTGGGTGTCACCATTGACATATGCCTTCAATTCCTTGGCTGTGAATGAAATGTTTGCTCCAAGGTGGATGCATCCACAGACATCTTCGGATCGAAGTACCACATTGGGTCTGTCAGTACTAAGAAACTTTGATGTTTTTGCTAAAGAAGAATGGTACTGGATAGGAGCCGCTGCTCTTTTTGGTTATATCATTTTCTACAATGTTCTCTTCACCCTTGCGCTTATGTACCTTAACCCTCTTGGAAAGAAACAAGCAATTATTTCTGAGGAAGATGCAAGTGAAATGGAGACCGGAGGAGACACCAACGAAGAACCTAGACTTGTAAGGCCCCCACAGTCCAACAAAGATTCAATGCTTCGATCATTATCTACTGCTGATGGAAATAATGCAAGAGAAGTGGCAATGCAGCGAATGGGAAGCCAAGCTACCAGTGGATTAAGAAAAGTTGATTCAGCAAATGATTCAGCTACTGGAGTTGCCCCCAAAAGAGGAATGATTCTACCTTTTCAACCACTTGCAATGTCCTTTGACACTGTTAATTACTACGTCGACATGCCTGCAGAAATGAAAGCGCAAGGTGTGACTGAAGATAGGCTACAACTGCTTAGGGGAGTAACCAGTTCCTTTAGGCCTGGAGTGCTAACTGCACTAATGGGAGTTAGTGGAGCTGGGAAGACAACTTTAATGGATGTTTTAGCAGGAAGAAAGACTGGTGGCTACATTGAAGGAGATATTAGAATCTCAGGGTTCCCCAAGAACCAAGAAACCTTTGCAAGAGTTGCTGGTTACTGCGAACAAACTGATATTCATTCACCCCAAGTTACTATTCGTGAATCTTTGATTTACTCTGCCTTCCTCCGTTTACCAAAAGAAGTTAGTGAGGAGGAGAAAATACAATTTGTGGACCAAGTGATGGATCTGGTAGAGCTGGATAATCTGAAGGACGCTATAGTGGGGCTTCCAGGGGTTACAGGGTTGTCAACTGAGCAAAGAAAGAGGTTGACCATTGCTGTTGAGCTTGTTGCTAATCCTTCAATCATTTTCATGGATGAACCCACTTCAGGACTTGATGCAAGAGCAGCAGCTATTGTTATGAGGACTGTGAGAAACACTGTGGACACGGGAAGAACGGTTGTTTGCACAATTCACCAGCCTAGCATTGATATCTTTGAAGCCTTCGATGAGCTTTTGTTGATGAAAAGAGGAGGGCAAGTGATCTACTCAGGACCATTAGGCCGAAATTCGCACAAGATTATAGAATACTTTGAGGCAATTCCAGGGGTCCCAAAAATTAAAGAGATGTACAACCCTGCAACATGGATGTTAGAAGTGAGTTCTGTAGCAGCTGAAGTTCGGCTTGGAATGGACTTTGCTGAATACTACAAATCTTCATCTTTGTTTCAGCGAAACAAAGCCCTTGTAAAGGAGCTGAGCACACCCCCACCTGGAACTACTGATCTGTATTTCCCCACTAAATACTCACAATCTTCACTGGGGCAATTCAAATCCTGTTTTTGGAAGCAGTGGCTGACATACTGGAGAAGTCCAGATTATAATCTTGTCAGATTCTTTTTCACCTTGGCAAGTGCCCTCATGATAGGGACAATATTTTGGAGAATTGGCAGAAATAGGGACACCTCAAGCGACCTTACAATGATCATTGGAGCAATGTATGCTGCTGTTATTTTTGTCGGCATTAACAACTGCCAAACCGTTCAACCAATCGTAGCCGTTGAAAGAACAGTGTTCTATCGAGAAAGAGCTGCTGGAATGTATGCTCCTCTGCCTTATGCCCTCGCACAGGTTTTTGCCGAAATCCCATATGTATTTGTTCAAGCTGTGTACTACTCACTCCTAATCTATGCCATGGTGAACTTTGAATGGAAAGTGGAGAAGTTCTTTTGGTTCTTCTTTGTCAGCTTCTTCTCTTTCTTGTACTTCACATATTATGGTATGATGACTGTTTCCATCACACCAAACCACCAAGTGGCATCAATCTTTGCAGCAGCATTCTATGGACTCTTCAATCTCTTCTCTGGTTTCTTTATCCCAAGACCCAAAATTCCTAAATGGTGGGTGTGGTATTACTGGATTTGCCCAGTGGCATGGACGGTGTATGGATTAATTGTCTCTCAATATAGAGATATAGAGGACCCAATTGATGTGCCAGGGAGTGCCATAAATTTCACTGTTAAAGGATACATTGAAGACCACTACGGGTTTAAACCAGATTTCATGGGTCCAGTTGCTGCAGTTTTGGTGGCTTTCACTGTCTTCTTTGCCTTTGTATTTTCCTTCTGCATCAAGACACTGAACTTCCAATCAAGATAA 4461 0.4329 MDGNFTRSISRSISRSSWRMEEVFASGRYSRRTSQVDEDEEALKWAAIEKLPTYDRLRTSIIQTFAEGGEQQPGNQVLHKEVDVRKLDMNDRQQIIDKIFKVAEEDNEKFLRKFRNRIDKVGIRLPTVEVRFQNLTIEANSFVGSRALPTLPNSALNILESFFGMCGISTAKRTKLTILKNASGIVKPSRMALLLGPPSSGKTTLLLALAGKLDPELKVKGEITYNGHKLDEFVPRKTSAYISQNDVHVGEMTVKETLDFSARCLGVGTRYDLLTELARREKEAGIFPEADVDLFMKATAMEGTESSLITDYTLKILGLDICKDTIVGDEMHRGVSGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATILMSLLQPAPETFNLFDDIILISEGQIVYQGPREHIVEFFESCGFRCPERKGTADFLQEVTSRKDQEQYWADKNRPYRYVTVTEFANKFKRFHVGMRLESELNVPFDKSSAHKAALVYSKNSVPTMDLFKACWDKEWLLIKRNSFVYIFKTVQIIIIAIISATLFLRTEMDQSNEDGASLYIGAILFSMIMNMFNGFAELALTIGRLPVFYKHRDHLFHPAWTYTLPNFLLRIPISVFESLAWVGVTYYTIGFAPEASRFFKQLLAVFLIQQMAAGMFRFISGVCRTMIIANTGGALMLLLVFLLGGFILPKREIPDWWVWAYWVSPLTYAFNSLAVNEMFAPRWMHPQTSSDRSTTLGLSVLRNFDVFAKEEWYWIGAAALFGYIIFYNVLFTLALMYLNPLGKKQAIISEEDASEMETGGDTNEEPRLVRPPQSNKDSMLRSLSTADGNNAREVAMQRMGSQATSGLRKVDSANDSATGVAPKRGMILPFQPLAMSFDTVNYYVDMPAEMKAQGVTEDRLQLLRGVTSSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKNQETFARVAGYCEQTDIHSPQVTIRESLIYSAFLRLPKEVSEEEKIQFVDQVMDLVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEMYNPATWMLEVSSVAAEVRLGMDFAEYYKSSSLFQRNKALVKELSTPPPGTTDLYFPTKYSQSSLGQFKSCFWKQWLTYWRSPDYNLVRFFFTLASALMIGTIFWRIGRNRDTSSDLTMIIGAMYAAVIFVGINNCQTVQPIVAVERTVFYRERAAGMYAPLPYALAQVFAEIPYVFVQAVYYSLLIYAMVNFEWKVEKFFWFFFVSFFSFLYFTYYGMMTVSITPNHQVASIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYRDIEDPIDVPGSAINFTVKGYIEDHYGFKPDFMGPVAAVLVAFTVFFAFVFSFCIKTLNFQSR* 1487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0182 1486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 907 1121 IPR027417 -
Vra9g0182 1486 Gene3D - 898 1131 IPR027417 -
Vra9g0182 1486 PANTHER ATP-BINDING CASSETTE TRANSPORTER 9 1486 - -
Vra9g0182 1486 CDD ABCG_PDR_domain1 172 418 IPR034001 -
Vra9g0182 1486 CDD ABCG_PDR_domain2 881 1119 IPR034003 -
Vra9g0182 1486 Gene3D - 166 478 IPR027417 -
Vra9g0182 1486 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 884 1137 IPR003439 GO:0005524
Vra9g0182 1486 SMART AAA_5 188 420 IPR003593 -
Vra9g0182 1486 SMART AAA_5 921 1113 IPR003593 -
Vra9g0182 1486 Pfam Plant PDR ABC transporter associated 732 797 IPR013581 -
Vra9g0182 1486 Pfam ABC-2 type transporter 515 726 IPR013525 GO:0016020|GO:0140359
Vra9g0182 1486 Pfam ABC-2 type transporter 1210 1423 IPR013525 GO:0016020|GO:0140359
Vra9g0182 1486 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 9 1486 - -
Vra9g0182 1486 Pfam ABC transporter 179 361 IPR003439 GO:0005524
Vra9g0182 1486 Pfam ABC transporter 912 1064 IPR003439 GO:0005524
Vra9g0182 1486 MobiDBLite consensus disorder prediction 801 831 - -
Vra9g0182 1486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 436 IPR027417 -
Vra9g0182 1486 Pfam ABC-2 type transporter 1093 1153 IPR043926 GO:0140359
Vra9g0182 1486 Pfam ABC-2 type transporter 394 448 IPR043926 GO:0140359
Vra9g0182 1486 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 156 436 IPR003439 GO:0005524
Vra9g0182 1486 Pfam ABC-transporter N-terminal 94 153 IPR029481 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0182 Vra-Chr9 1266073 1275374 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0182 K08711 - gmx:100798588 2692.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2477 5 31721157 31729686 Vra9g0182 9 1266073 1275374 PCT