Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2477 ATGGAGGGTAGCAATTTAAGCAGAAGCATAAGTAGGAGCTTGAGCAGGTCAAGTTGGAGAATGGAGGGTGTGTTTGCGAGTGGGAGATATTCAAGAAGAACATCAAATATTGATGAGGACGAAGAGGCTCTCAAGTGGGCAGCCATAGAGAGATTACCAACCTACGACAGACTAAGAACAAGTATCCTTCAAACTTTTGCAGAGGGTGATCATGCTCGTCCCAACACATTGCAACACAGAGAAGTCGATGTTAGAAAGTTAGATGTCAACGAAAGGCAAGAGTTTATAGACAGAATCTTCAAGGTTGCCGAAGAAGACAATGAAAAGTACTTGAGCAAGTTCAGAAACAGACTTGAAAAGGTTGGTATCCGACTCCCAACAGTAGAAGTGAGGTTTCAAAATTTGACAGTTGAGGCTGATTCCTACGTTGGAAGCAGAGCTCTGCCAACACTACCAAACGTTGCATTGAACATTGCTGAATCAGCTCTTGGCTTGTGTGGGATTAGTACCGCAAAGAGAAGAAAGCTCACTATTCTTAAAGATGTCTCCGGCATTATTAAACCTTCTAGAATGGCCCTTCTGCTTGGTCCTCCATCTTCAGGGAAAACGACCCTTTTGCTGGCGTTGGCTGGAAAATTGGACAATGATTTGAGGGTTCGAGGAGAAATCTCCTACAACGGGTACAAGCTCAATGAGTTTGTCCCAAGAAAGACTTCAGCCTACATTAGCCAGAATGATGTGCATATTGGAGAAATGACTGTAAAAGAAACCTTCGATTTCTCAGCTAGATGTCAAGGAGTTGGAACAAGATATGACCTATTAGCCGAGCTTGCTCGAAGGGAAAAAGAAGCTGGAATATTTCCAGAGGCAGAACTTGATCTTTTCATGAAGGCCACTGCAATGGAGGGAACCGAAAGCAGTCTCATTACTGACTATACTCTCAAAATATTGGGGCTTGATATTTGCAAAGATACGATCGTGGGTGATGAAATGCACAGAGGAGTATCTGGTGGCCAAAAGAAGCGTGTAACAACAGGAGAAATGATTGTTGGGCCCACAAAAACATTGCTGATGGATGAAATATCAACGGGTCTTGATAGCTCCACGACATATCAAATAGTGAAATGCTTCCAGCAGATTGTACACCTTACGGAAGCAACCATATTCATGTCTCTACTCCAACCTGCTCCGGAGACGTTCGATCTGTTTGATGACATCATCTTGATATCGGAGGGTCAGATTGTTTATCAGGGCCCACGTGAGCACATCATTGAGTTCTTTGAATCATGTGGATTTAGATGTCCTGAAAGAAAGGGAACCGCAGATTTCTTACAGGAGGTTACTTCAAGGAAAGACCAAGAACAATATTGGATAAATAGAAACATACCATATCATTACATCACAGTAAGCGAATTTGCAAATAGATTCAAGCAATTCCATGTTGGAATGCAACTTGAGAATGAACTATCCGTGCCATTTGACAAATCAAAGGGACATAGAGCAGCTCTTGTTTTCAAGAAATATACAGTGCCCACAATGGGACTTCTTAAGGCATGTTGGGATAAGGAATTGCTACTGATCAAGAGGAACTCTTTTGTCTATATATTTAAGACAGCTCAAATATGCATCATTGGTATCATAGCTGCAACTGTGTTCTTTAGGACCAAAATGCATCAAAGGGATGAGTCTGATGCAGCAGTTTACATAGGTGCCATTTTGTTTACCATGATCATGAACATGTTCAATGGTTTTTCTGAATTACCACTCACCATTGCAAGACTTCCTGTTTTCTACAAGCACAGAGACCACCTTTTCCATCCTCCTTGGACTTATACCCTCCCTAATTTCTTACTAAGAATCCCCATTTCTATCTTTGAAGCTATTGTTTGGGTACTTCTCACATACTACCCAATAGGATTTGCACCTGAAGCTAGCAGGTTTTTCAAGCACCTGTTGTTAGTTTTTCTTGTCCAACAAATGGCAGCTGGGATGTTTAGGCTCATATCTGGAGTTTGTAGAACCATGATTATTGCTAACACTGGTGGAGCCCTCATGCTGCTTCTTGTTTTTCTACTTGGAGGTTTTATCCTTCCTAAACGTGACATTCGAGATTGGTGGATATGGGGTTACTGGATTTCACCATTAACATATGCGTACAATGGTTTGACAGTGAACGAATTATTTGCTCCAAGGTGGAGCAAACCGGCTAAAGATGGTGTAACCCCAATCGGTTTGGCTACGTTAAATAACTTTGACGTTTTCGCCGAGAAAGGATGGTACTGGATAGGTGTAGCGGTTCTCTTGGCCTTCACTGTTCTGTACAATGTTCTCTTCACCTTTGCACTCATGTACCTTAATCCCATTGGAAAAAAACAAGCAATAATATCTGAAGAAGAAGCAACCGAAATGGAAACTGGAGGAAACTCTAGGGAAGAGCCTAGACTTCTAAGGCCAGAGCCCAACAGAGAGATAGCTCCTCAGCCATTATATTCTACTGATGGAAACAACACACGAGAAGTGGCAATGCAACAAATGAGTGGCCGAGGTCATCCTAGTGGAATGAGAAATGTTGATTCAATGCGTGATTCAACCCTTGGTGTTTCCCCGAAGAAGGGAATGGTTCTACCTTTTCAACCACTTGCAATGTCTTTTGACAGTGTTAATTATTATGTGGACATGCCTGCTGAAATGAAAGAGCAAGGAGTGACAGAAGATAGACTACAGTTACTGAGGGAAGTAACTGGTGCCTTTAGGCCTGGAGTTTTGACTGCTTTAATGGGAGTGAGTGGAGCTGGAAAGACAACTTTGATGGATGTTTTAGCTGGGAGAAAAACAGGTGGCTACATTGAAGGAGATGTTAGAATATCAGGCTACCCAAAGAATCAAGAAACATTTGCAAGAATTTCTGGCTACTGTGAGCAGACTGATATCCATTCACCCCAAGTTACTATTCGAGAGTCTTTGATCTATTCTGCTTTCCTTCGTTTACCTAGAGAGGTCAATAATGAGGAGAAAATGAAATTTGTCGATGAAGTAATGGACTTGGTTGAGCTAGACAATCTCAAGGATGCTATAGTTGGGCTTCCAGGTGTTACGGGGTTGTCTACCGAACAAAGAAAAAGACTAACAATTGCTGTTGAACTTGTTGCAAATCCTTCAATCATTTTCATGGATGAACCCACTTCAGGTCTCGATGCAAGAGCAGCAGCCATTGTGATGAGGACTGTGAGAAACACTGTTGACACTGGAAGAACAGTTGTATGCACAATTCACCAACCTAGCATTGATATCTTTGAGGCTTTTGACGAGTTGTTGTTGATGAAGAGAGGAGGCCAAGTGATATACTCAGGACCATTAGGAAGGAATTCGCACAAGATTATAGAATATTTTGAGGCAATCCCAGGGGTCCCAAAAATTAAGGACAAGTACAATCCAGCCACATGGATGTTAGAGGTAAGCTCTATAGCAGCTGAAGTTCGACTTGGAATGGATTTTGCAGAGTACTACAAAACATCATCTTTATACCAGCGAAACAAAGCTCTCATAAGGGAATTAAGCACACCTCCACCAGGAGCAAAAGATTTGTACTTCCCTACTCAGTATTCTCAGTCCACTTGGGAACAATTCAAGTCTTGTTTATGGAAGCAATGGTTGACTTATTGGAGAAGTCCAGATTATAACCTTGTCAGATTTTTCTTCACCTTAGCTGTAGCTTTCGTGGTGGGGACAGTATTTTGGAGGGTTGGCAAAAAAAGGGGAAGCTCAAGCGACTTGAACACTATTATAGGAGCTCTATATGGATCTATATTTTTCGTTGGTGTTAACAATTGTCAAACTGTTCAACCAGTAGTGGCAGTTGAAAGAACAGTGTTTTATCGAGAAAGAGCTGCTGGAATGTATTCTGCTTTGCCTTATGCCATTGCACAGGTTATCTCTGAAATACCATATGTATTTGTTCAAACTATTTATTTTGCATTCATAGTGTATGCTATGGTGAGCTTTGAATGGAAAGTGGAAAAGGTCCTCTGGTTTTTCTTTGTTAGTTTTTTCTCCTTCTTGTACTTCACATATTATGGGATGATGACTGTTTCCATTACACCAAACCACCAAGTGGCATCAATCTTTGGAGCAGCTTTCTATGGACTCTTCAATCTCTTTTCTGGTTTCTTCATCCCAAGACCAAAAATTCCAAAATGGTGGGTTTGGTATTATTGGATCTGCCCAGTAGCATGGACAGTGTATGGGTTAATTGTCTCACAGTATAGAGATGTAGAGATAACCATTTTTGTGCCTGGTGAGAATAATCAAACAATCAAGCACTATATTGAAGACCATTATGGGTTTAAACCCAACTTCATGGGACCAGTTGCTATTGTTTTGGTCGCTTTTCCAGTCTTCTTTGCCTTTATATTTGCCTTCTCCATCAAAACACTAAACTTCCAAACCAGATAA 4452 0.4128 MEGSNLSRSISRSLSRSSWRMEGVFASGRYSRRTSNIDEDEEALKWAAIERLPTYDRLRTSILQTFAEGDHARPNTLQHREVDVRKLDVNERQEFIDRIFKVAEEDNEKYLSKFRNRLEKVGIRLPTVEVRFQNLTVEADSYVGSRALPTLPNVALNIAESALGLCGISTAKRRKLTILKDVSGIIKPSRMALLLGPPSSGKTTLLLALAGKLDNDLRVRGEISYNGYKLNEFVPRKTSAYISQNDVHIGEMTVKETFDFSARCQGVGTRYDLLAELARREKEAGIFPEAELDLFMKATAMEGTESSLITDYTLKILGLDICKDTIVGDEMHRGVSGGQKKRVTTGEMIVGPTKTLLMDEISTGLDSSTTYQIVKCFQQIVHLTEATIFMSLLQPAPETFDLFDDIILISEGQIVYQGPREHIIEFFESCGFRCPERKGTADFLQEVTSRKDQEQYWINRNIPYHYITVSEFANRFKQFHVGMQLENELSVPFDKSKGHRAALVFKKYTVPTMGLLKACWDKELLLIKRNSFVYIFKTAQICIIGIIAATVFFRTKMHQRDESDAAVYIGAILFTMIMNMFNGFSELPLTIARLPVFYKHRDHLFHPPWTYTLPNFLLRIPISIFEAIVWVLLTYYPIGFAPEASRFFKHLLLVFLVQQMAAGMFRLISGVCRTMIIANTGGALMLLLVFLLGGFILPKRDIRDWWIWGYWISPLTYAYNGLTVNELFAPRWSKPAKDGVTPIGLATLNNFDVFAEKGWYWIGVAVLLAFTVLYNVLFTFALMYLNPIGKKQAIISEEEATEMETGGNSREEPRLLRPEPNREIAPQPLYSTDGNNTREVAMQQMSGRGHPSGMRNVDSMRDSTLGVSPKKGMVLPFQPLAMSFDSVNYYVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRISGYPKNQETFARISGYCEQTDIHSPQVTIRESLIYSAFLRLPREVNNEEKMKFVDEVMDLVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKDKYNPATWMLEVSSIAAEVRLGMDFAEYYKTSSLYQRNKALIRELSTPPPGAKDLYFPTQYSQSTWEQFKSCLWKQWLTYWRSPDYNLVRFFFTLAVAFVVGTVFWRVGKKRGSSSDLNTIIGALYGSIFFVGVNNCQTVQPVVAVERTVFYRERAAGMYSALPYAIAQVISEIPYVFVQTIYFAFIVYAMVSFEWKVEKVLWFFFVSFFSFLYFTYYGMMTVSITPNHQVASIFGAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYRDVEITIFVPGENNQTIKHYIEDHYGFKPNFMGPVAIVLVAFPVFFAFIFAFSIKTLNFQTR* 1484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2477 1483 PANTHER ATP-BINDING CASSETTE TRANSPORTER 10 1483 - -
Vra5g2477 1483 Pfam ABC transporter 179 361 IPR003439 GO:0005524
Vra5g2477 1483 Pfam ABC transporter 910 1062 IPR003439 GO:0005524
Vra5g2477 1483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 217 IPR027417 -
Vra5g2477 1483 SMART AAA_5 919 1111 IPR003593 -
Vra5g2477 1483 SMART AAA_5 188 413 IPR003593 -
Vra5g2477 1483 CDD ABCG_PDR_domain1 172 418 IPR034001 -
Vra5g2477 1483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 903 1119 IPR027417 -
Vra5g2477 1483 MobiDBLite consensus disorder prediction 800 834 - -
Vra5g2477 1483 Pfam ABC-2 type transporter 394 448 IPR043926 GO:0140359
Vra5g2477 1483 Pfam ABC-2 type transporter 1091 1152 IPR043926 GO:0140359
Vra5g2477 1483 MobiDBLite consensus disorder prediction 800 819 - -
Vra5g2477 1483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 436 IPR027417 -
Vra5g2477 1483 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 882 1135 IPR003439 GO:0005524
Vra5g2477 1483 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 163 436 IPR003439 GO:0005524
Vra5g2477 1483 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 10 1483 - -
Vra5g2477 1483 Pfam ABC-2 type transporter 1207 1421 IPR013525 GO:0016020|GO:0140359
Vra5g2477 1483 Pfam ABC-2 type transporter 516 727 IPR013525 GO:0016020|GO:0140359
Vra5g2477 1483 Gene3D - 166 471 IPR027417 -
Vra5g2477 1483 Pfam Plant PDR ABC transporter associated 732 795 IPR013581 -
Vra5g2477 1483 Gene3D - 896 1129 IPR027417 -
Vra5g2477 1483 CDD ABCG_PDR_domain2 879 1117 IPR034003 -
Vra5g2477 1483 Pfam ABC-transporter N-terminal 94 154 IPR029481 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2477 Vra-Chr5 31721157 31729686 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2477 K08711 - gmx:100801386 2657.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2477 5 31721157 31729686 Vra9g0182 9 1266073 1275374 PCT