Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0160 ATGGAGAAGGAGGTTGAGCTTTGTTCAGCTCAACCCCAAATGGCTTCTCACCGAATTTCTCAATTCGAAGGGCGTGCTAAGGGTGGCCTCGTTACCATGCCTTTCATCATAGGAAATGAAGCACTTGCGAGAGTGGCAACCTTGGGGCTTCTGCCCAATATGATACTGTATTTGATGGGAAGTTACAATCTTCATCTGGGCAAAGCTACCCAGATACTCCTGTTATCTGTTGCAATCACCAATTTCATGCCTCTTCCTGGGGCTTTCATTGCCGATTCTTATCTGGGTCGCTTCCTCGCTGTTGGTTTAGGTTCCTTCATCACTTTCCTGGGAATGGCACTATTGTGGCTAACAGCCATGATCCCAGAGGCTCGGCCTCCTCATTGCAATTCTGAAACTGAAAAATGTGTATCAGCAACATTTGGGCAGATGACAGTGTTAATCTCTTCCCTTGCTCTCATGTCCATTGGAAACGGTGGCCTTTCATGTTCCTTGGCCTTTGGTGCTGATCAGGTGAATAGAAAAGATAATCCCAATAATCAGAGAGCATTGGAGATATTCTTCAGCTGGTACTATGCTTCTTCAGCGATATCAGTCATAATTGCCTTCACTGGAATTGTGTATATCCAAGATCATCTTGGATGGAAATTAGGTTTTGGAGTTCCAGCAGCACTTATGTTCTTGTCCACTTTTCTCTTTTTTCTGGCATCTCCACTCTATGTAAAGCATAAAACACACAGCAGCTTGCTCACTGGCTTTGCCCGTGTCATTGTTGTAGCATATAAGAACAGGAAACTTCGATTACCACATAAGATCTCTGATGGAATGTATCATCATAAGCAGGACTCTGATCTAGTTGTTCCAACTGATAAACTGAGGTTTCTGAATAAAGCTTGCTTCATTAAGGACCCTGAAAAAGATATAGCCTCTGATGGCTCAACGTTGAATCCATGGAATCTGTGCACAGTTGATCAAGTAGAAGAACTAAAAGCTATTGTAAAAGTTATTCCTCTGTGGTCTACGGGGATCATGATGTATCTGAACATTGGAGGCTCATTTGGATTGCTGCAAGCTAAATCCCTTAACAGACATATCACTCCAAACTTTGAAGTTCCAGCTGGTTCTTTGGCAGTAATCATGATATTCACAATTTTCATTTGGATAGCTCTTTATGACCGAGTGATTATTCCTCTAGCATCAAAGCTCAGAGGCAAACCAATAAGGATCAGTTCCAAGACAAGAATGGGACTTGGGTTGTTTTTCTCTTTTCTCCACTTGGTAACTGCAGCAATTGTTGAGACAATAAGGAGAAGGAGAGCAATTAGTGAGGGACATGTTAATGACACACATGCAGTGTTGAACATGTCTGCAATGTGGCTTTTTCCTCAACTTTGCTTGGGTGGCATAGCTGAAGCATTCAATGCAGTAGGCCAGAATGAGTTCTATTACAGTGAGTTTCCAAAGACCATGTCAAGCATTGCTTCTTCCTTTTTTGGACTGGGAATGGCTGTGGGATATGTGTTATCTTCTTTACTATTTCATGCTGTGGAAAAAGTTACTTCAAGAGGTGGAAATGGTGGATGGATCTCAGATAACATTAACAAGGGTCATTTTGACAAGTACTACTGGCTTCTTGTCACTCTCAGTGCTGTTAATTTACTGTATTATCTACTTTGCAGTTGGAATTATGGACCTACTGCAGATCTACAATCAAAGCTAAATCAAGAAAATGGTTCCCAAGAGGAAGAATTACCATTAATTAGATAA 1767 0.416 MEKEVELCSAQPQMASHRISQFEGRAKGGLVTMPFIIGNEALARVATLGLLPNMILYLMGSYNLHLGKATQILLLSVAITNFMPLPGAFIADSYLGRFLAVGLGSFITFLGMALLWLTAMIPEARPPHCNSETEKCVSATFGQMTVLISSLALMSIGNGGLSCSLAFGADQVNRKDNPNNQRALEIFFSWYYASSAISVIIAFTGIVYIQDHLGWKLGFGVPAALMFLSTFLFFLASPLYVKHKTHSSLLTGFARVIVVAYKNRKLRLPHKISDGMYHHKQDSDLVVPTDKLRFLNKACFIKDPEKDIASDGSTLNPWNLCTVDQVEELKAIVKVIPLWSTGIMMYLNIGGSFGLLQAKSLNRHITPNFEVPAGSLAVIMIFTIFIWIALYDRVIIPLASKLRGKPIRISSKTRMGLGLFFSFLHLVTAAIVETIRRRRAISEGHVNDTHAVLNMSAMWLFPQLCLGGIAEAFNAVGQNEFYYSEFPKTMSSIASSFFGLGMAVGYVLSSLLFHAVEKVTSRGGNGGWISDNINKGHFDKYYWLLVTLSAVNLLYYLLCSWNYGPTADLQSKLNQENGSQEEELPLIR* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0160 588 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 18 575 IPR000109 GO:0016020|GO:0022857|GO:0055085
Vra9g0160 588 Gene3D MFS general substrate transporter like domains 5 569 IPR036259 -
Vra9g0160 588 SUPERFAMILY MFS general substrate transporter 48 561 IPR036259 -
Vra9g0160 588 ProSitePatterns PTR2 family proton/oligopeptide symporters signature 1. 87 111 IPR018456 GO:0006857|GO:0016020|GO:0022857
Vra9g0160 588 CDD MFS_NPF1_2 33 563 - -
Vra9g0160 588 Pfam POT family 100 529 IPR000109 GO:0016020|GO:0022857|GO:0055085
Vra9g0160 588 PANTHER PEPTIDE/NITRATE TRANSPORTER 18 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0160 Vra-Chr9 1078152 1081008 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0160 13 583 Organic Solute Cotransporters AT1G52190 55.517 0.0 680
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0160 - K14638 vra:106773022 1174.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2456 5 31579738 31582523 Vra9g0160 9 1078152 1081008 PCT