Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2456 ATGGACAAGGAAGTGGAACTTGGTTCCCTTGAAGGGGAGTTGTCTACCCAACACATTTCACAGCCACAGAGGCGCAAGGGTGGTCTTGTGACCATGCCTTTCATCATCGCAAATGAGGCACTTGCTAGTATGGCAAGTTTGGGCCTTTTGCCCAACATGATACAGTACTTGATGGGAAGTTACAAGCTTCACCTTGCCAAAGCAACTCAGATACTTCTCTTGTCATCTGCTACCAGCAATTTCACCCCTGTGGTGGGTGCTTTCGTTGCTGATTCTTATCTGGGTCGATTCCTCACTGTTGCGTTGGGTTCTGTCATCTGTTTTCTGGGAATGTCGCTGCTGTGGTTAACAGCTATGATCCCACAGGCACGGCCTCCACCTTGCAGCCATGATTCTGAAGGCTGTAAATCGGCAACAGGAGGTCAAATGGCAATGTTAATCTCGGCCCTTGCACTCACGTCGATTGGAAAGGGTGGTCTAGCATGTTCCTTGGCATTCGGTGCAGACCAGGTCAACAGAAAGGATAACCCCAACAACCAGAGGGCTATGGAGACATTCTTCAGCTGGTACTATGCTTTTGCTGCTATTTCTGTCATCATTGGACTCACCGTAATTGTTTACATCCAAGATAGTGTCGGATGGAAAGTGGGTTATGGAGTTCCAGCAGCACTCATGCTTTTATCTACCATCTTCTTCCTCCTTGCCTCTCCACTTTACGTAAAGAACAAAGTAAAATCCAGCTTGTTCACTGGATTTGCGCAAGTGATCACTGTTGCCTACAAGAACAGAAAGCTTTCATTACCACCTACGAACTCCCCTGAACTTTACCACCGTAAGAAGGACTCGGATCTCGTTGTTCCAACTGATAAACTAAGTTTTCTGAACAAAGCTTGCGTTATAAGAAATCCGGAACTGGATATCGCCTCTGATGGTTCAGCATCAAATCCATGGAGACTCTGCACAGTAGATCAAGTAGAGGAACTAAAAGCCATTATTAGAGTGGTTCCATTGTGGTCTACAGGGATCATGATGTCAGTGAACATTGGAGGCTCATTTGGGTTACTGCAAGCTAAATCCTTGAACAGACATATCACCTCACACTTTCAAGTGCCACCCGGTTCTTTCAGTGTAATCTTGGTGCTTTCAATATTTGTATGGATAGCTCTGTATGACCGAGTCATTCTTCCTGTAGCATCAAAGATAAGAGGGAAACCAGTGAGGATAAATGCAAAGAGAAGAATGGGAGTTGGATTAGTTTTCTCTTTTGTTCATCTGGTAGTTTCAGCAATCGTAGAGACTACAAGGCGAAAAAGAGCAATCGAAGAGGGATATCTTAATAACGGGCATGCGATTCTGCATATGTCTGCAATGTGGATTTTCCCACAACTTATCTTGGGTGGCATTGCGGAAGCATTCAATGCAATAGGCCAAAATGAGTTTTATTACACAGAATTTCCAAAGAGTATGTCGAGCGTTGCTACTTCTCTTTCTGGACTGGGAATGGCTGCAGGAAACTTGGTATCTAGTTTTGTATTCAGCGTGATAGAAAACGTTACTTCAAGCGGGGGAAAACAGGGTTGGATTTCAGACAACATTAACAAGGGTCGTTATGACAAGTATTACTGGGTTATTTCTGGATTGAGTGCTCTTAATATAGTGTATTACCTACTATGCAGTTGGGCTTATGGTCCTACCGTTGATGAACTGCGTAAGGTAGGTGAAGAAAATGGCTCATCGATGGAGGAGGAAGCTTCAACTGAACTTAGAAATGGAGGTCAGTTTCACAAAGACTTCAACAATAGTAAAGAAAATGGCTCAAAGGATTAA 1827 0.4401 MDKEVELGSLEGELSTQHISQPQRRKGGLVTMPFIIANEALASMASLGLLPNMIQYLMGSYKLHLAKATQILLLSSATSNFTPVVGAFVADSYLGRFLTVALGSVICFLGMSLLWLTAMIPQARPPPCSHDSEGCKSATGGQMAMLISALALTSIGKGGLACSLAFGADQVNRKDNPNNQRAMETFFSWYYAFAAISVIIGLTVIVYIQDSVGWKVGYGVPAALMLLSTIFFLLASPLYVKNKVKSSLFTGFAQVITVAYKNRKLSLPPTNSPELYHRKKDSDLVVPTDKLSFLNKACVIRNPELDIASDGSASNPWRLCTVDQVEELKAIIRVVPLWSTGIMMSVNIGGSFGLLQAKSLNRHITSHFQVPPGSFSVILVLSIFVWIALYDRVILPVASKIRGKPVRINAKRRMGVGLVFSFVHLVVSAIVETTRRKRAIEEGYLNNGHAILHMSAMWIFPQLILGGIAEAFNAIGQNEFYYTEFPKSMSSVATSLSGLGMAAGNLVSSFVFSVIENVTSSGGKQGWISDNINKGRYDKYYWVISGLSALNIVYYLLCSWAYGPTVDELRKVGEENGSSMEEEASTELRNGGQFHKDFNNSKENGSKD* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2456 608 MobiDBLite consensus disorder prediction 574 608 - -
Vra5g2456 608 CDD MFS_NPF1_2 32 562 - -
Vra5g2456 608 Gene3D MFS general substrate transporter like domains 5 570 IPR036259 -
Vra5g2456 608 SUPERFAMILY MFS general substrate transporter 22 559 IPR036259 -
Vra5g2456 608 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 16 576 IPR000109 GO:0016020|GO:0022857|GO:0055085
Vra5g2456 608 MobiDBLite consensus disorder prediction 1 22 - -
Vra5g2456 608 ProSitePatterns PTR2 family proton/oligopeptide symporters signature 1. 86 110 IPR018456 GO:0006857|GO:0016020|GO:0022857
Vra5g2456 608 Pfam POT family 97 528 IPR000109 GO:0016020|GO:0022857|GO:0055085
Vra5g2456 608 PANTHER PEPTIDE/NITRATE TRANSPORTER 16 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2456 Vra-Chr5 31579738 31582523 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2456 11 583 Organic Solute Cotransporters AT1G52190 55.766 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2456 - K14638 gmx:100792940 1005.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2456 5 31579738 31582523 Vra5g2456 5 31579738 31582523 ECH
Vra5g2456 5 31579738 31582523 Vra9g0160 9 1078152 1081008 PCT