Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0159 ATGGAGGCAACAATGGAGAAGCAAGTGGAGCTTTGTTCAAGAGAAGTTGAAATGGTATCAGAACACATTCAACGACCACAAAAGGAAAAGGGTGGTTTCGTTACCATGCCTTTCATCATGGCAAATGAGGCACTTGCAAAAGTTGCAACATTTGGTCTTGTGCCAAACATGGTAGTGTATTTGATGGGGAGTTACCACTTTCATTTAGCCAAAGCAACCCAAGTGCTTCTATTGTCCTCTGCAACTAGCAATATCACACCACTCATAGGTGCTTTCATTGCTGATTCTTACTTGGGTCGATTTCTCTCTGTTGGGTTAGGATCCACCGTCATTTTTCTGGGAATGACACTCTTGTGGCTAACAGCGATGGTTCCACAAGCTCGGCCTCTTCCTTGCAATCAAGAACCTGGAAGATGTAAATCAGCAACAACTGGGCAAATGACAATGCTAATCTCTTCCTTTGCTCTCATGTCTCTTGGAAATGGTGGTCTTGCATGTTCCATGCCATTTGGTGCAGACCAGGTCAACAAAAAGGATAACCCCAAAAACCAGAGGGTGTTAGAAACATTTTTCAGCTGGTATTATGCTTTTACAGCTTTTGCTGTCATAATAGCCCTCACAGTCATAGTGTATATCCAAGATCATTTTGGGTGGAAATTGGGTTTTGGAGTTCCAGCAGCACTTATGTTCATGTCCACTTTATCGTTTTTCATTGCTTCTCCACTTTATGTAAAGAACAAAGTTCAGGGCAGCTTAATCACTGGCCTAGCACAAGTAATTGTTGTGGCCTACAAGAACAGGAAGCTTCCTTTACCACCAAGTAACTCAGTTGAAATGTACCATCGTAGGAAAGACTCTGATCTTCTTGTTCCTGATGAAAAACTAAGGTTTCTGAATAAAGCTTGCATAATTCAAGATCCTGAAAAAGATATAGCCAGTGATGGATCAGCCTCGGATCCGTGGAGTCTCTGCACAATAGAACAAGTGGAAGAACTAAAAGCTATCATGAAAGTTATTCCACTGTGGTCTACAGGGATCATGGTGTCAGTTAACATTGGAGGCCCTTTTGGAATACTGCAAGCTAAATCCCTCAACAGGCACATCACTTCTAAGTTTGAAGTTCCAGCAGGTTCTTTTTCTGTAGTCTTGGTGTTTACAATATTTCTTTGGGTGGCTCTTTATGATCGTGCAATTATTCCTCTAGCATCAAAGATTGTAGGAAAACCGGTTAGGATAAGTGCCAAGAGAAGAATGGGAATTGGGTTGGGTTTCTCTTTACTCCACTTTGCAACTGCAGCAATTGTGGAGACTACAAGGAGAAGTAGAGCAATCAGGGAGAGACATGTTGATGACATGCATGCAGTGTTGAATATGTCTGGAATGTGGCTTGTTCCTCAACTTTTCTTGGCAGGCTTGGCTGAAGCATTCAATGCCATAGGCCAAAGTGAGTTCTATTACACAGAGTTTCCTAGAACAATGTCAAGTATTGCGTCTTGCCTTTTTGGACTTGGAATGGCTGCAGGAAACTTCTTATCTAGTTTCATATTCAGCACTGTGGAACATGTTACTTCAAGAGGAGGAAAAGAGGGATGGGTTTTGGATAATATTAACAAGGGTCGTTATGATAAGTACTATTGGCTTCTTGCTCTACTCAATGCTGTTAATATACTGTATTATCTAGTATGCAGCTGGGCTTATGGACCCACAATTGATCAAATGAGAAACCAGAAGAGTTCAAATGAGAAACCATTAGCTCAAAATGGCACTGTGAGCAAGGCATCACATGTCAGTGAAGAAGATATTGGCTTAAATGTGAAAAGAGTTAACTAG 1830 0.4142 MEATMEKQVELCSREVEMVSEHIQRPQKEKGGFVTMPFIMANEALAKVATFGLVPNMVVYLMGSYHFHLAKATQVLLLSSATSNITPLIGAFIADSYLGRFLSVGLGSTVIFLGMTLLWLTAMVPQARPLPCNQEPGRCKSATTGQMTMLISSFALMSLGNGGLACSMPFGADQVNKKDNPKNQRVLETFFSWYYAFTAFAVIIALTVIVYIQDHFGWKLGFGVPAALMFMSTLSFFIASPLYVKNKVQGSLITGLAQVIVVAYKNRKLPLPPSNSVEMYHRRKDSDLLVPDEKLRFLNKACIIQDPEKDIASDGSASDPWSLCTIEQVEELKAIMKVIPLWSTGIMVSVNIGGPFGILQAKSLNRHITSKFEVPAGSFSVVLVFTIFLWVALYDRAIIPLASKIVGKPVRISAKRRMGIGLGFSLLHFATAAIVETTRRSRAIRERHVDDMHAVLNMSGMWLVPQLFLAGLAEAFNAIGQSEFYYTEFPRTMSSIASCLFGLGMAAGNFLSSFIFSTVEHVTSRGGKEGWVLDNINKGRYDKYYWLLALLNAVNILYYLVCSWAYGPTIDQMRNQKSSNEKPLAQNGTVSKASHVSEEDIGLNVKRVN* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0159 609 CDD MFS_NPF1_2 36 566 - -
Vra9g0159 609 Pfam POT family 105 532 IPR000109 GO:0016020|GO:0022857|GO:0055085
Vra9g0159 609 SUPERFAMILY MFS general substrate transporter 37 563 IPR036259 -
Vra9g0159 609 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 19 579 IPR000109 GO:0016020|GO:0022857|GO:0055085
Vra9g0159 609 MobiDBLite consensus disorder prediction 577 594 - -
Vra9g0159 609 Gene3D MFS general substrate transporter like domains 6 575 IPR036259 -
Vra9g0159 609 MobiDBLite consensus disorder prediction 577 596 - -
Vra9g0159 609 PANTHER PEPTIDE/NITRATE TRANSPORTER 19 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0159 Vra-Chr9 1071564 1074686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0159 15 577 Organic Solute Cotransporters AT1G52190 55.867 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0159 - K14638 gmx:100805115 970.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2455 5 31573065 31576534 Vra9g0159 9 1071564 1074686 PCT