Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0131 ATGCCTCTCCGACTCGAAATTAAGCGAAAGCTTGCACAAAGATCAGAGAGAGTGAAGTCTGTGGATCTACATCCTACAGAACCATGGATTCTGGCAAGTTTATACTCTGGAACTGTCTGTATCTGGAACTACCAATCTCAGACCATGGCCAAGTCTTTTGAGGTTACTGAGTTACCAGTTAGGTCAGCTAAGTTTATTGCTCGCAGACAGTGGGTTGTGGCAGGGGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTTAAAGTATTTGAGGCACATACAGATTACATTAGATGTGTTGCAGTTCATCCTACCCTTCCTTATGTGTTGTCATCATCTGATGATATGCTCATAAAGCTTTGGGATTGGGAAAAGGGCTGGATCTGTACCCAGATATTTGAGGGGCATTCTCATTATGTCATGCAAGTGACATTTAATCCTAAAGACACAAACACCTTTGCCAGTGCATCTCTTGATCGCACCATAAAGATTTGGAATCTTGGCTCCCCTGACCCCAATTTTACATTGGATGCCCATCAAAAGGGAGTGAATTGTGTTGATTACTTTACTGGTGGTGACAAACCTTATCTAATTACTGGTTCTGATGATCACACTGCCAAGGTATGGGATTATCAAACCAAAAGTTGTGTCCAGACTCTAGAGGGTCACACACACAATGTATCTGCTGTATGTTTTCATCCTGAACTACCTATAATCATTACTGGATCTGAGGATGGCACAGTGCGCATTTGGCATTCAACAACTTATAGGCTGGAGAACACATTGAACTATGGCCTTGAAAGAGTTTGGGCTGTTGGATACCTGAAGGGTTCACGTCGGGTTGTGATAGGCTATGATGAAGGTACTATTATGGTCAAACTTGGTCGAGAAGAACCTGTAGCCAGCATGGATAACAGTGGAAAAATAATTTGGGCTAAGCACAATGAAATTCAAACCGTCAATATAAGGAGTATAGGAGCAGATGTGGAGATTGCTGATGGAGAAAGGTTACCATTGGCTGTTAAGGAGTTGGGCACCTGTGATCTCTATCCCCAAAGTCTAAGGCACAATCCAAATGGGAGGTTTGTTGTTGTTTGTGGAGATGGGGAATACATTATATACACTGCTTTGGCATGGAGAAACAGATCATTTGGTTCTGCCTTGGAGTTTGCTTGGTCTTCAGATGGGGAATACGCTGTAAGAGAAAGCACATCGAAAGTCAAAATATTCAGCAAAAATTTCCAGGAAAAGAAGAGTATCCGACCAACTTTTTCAGCTGAAAGAATATTTGGTGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTACGATTGGGCTGAATGCAGGTTGATTCGTCGTATTGATGTTAATGTTAAAAACCTCTACTGGGCTGACAGTGGTGATCTAGTGACAATTGCTAGTGATACATCATTCTACATCTTGAAGTACAATCGTGATGTTGTAGCATCATATTTAGATAGTGGAAGCCCTGCAGATGAGCAAGGTGTTGAAGATGCCTTTGAGCTCCTACATGAAACGAGTGAACGCATCAGGACAGGGATCTGGGTTGGGGATTGCTTTATCTACAACAATTCTTCTTGGAGGCTTAACTATTGTGTTGGTGGTGAGGTAACTACAATGTTTCATTTGGACCGTCCTATGTACTTGTTGGGATATCTTGCCAGCCAAAGTAGGGTCTATTTGATAGACAAGGAGTTCAATGTTATGGGATACACGCTACTTTTAAGCTTGATTGAGTACAAGACACTTGTCATGCGTGGTGACTTAGAAAGAGCCAATGAAATTCTACCATCAATTCCTAAAGAACATCATAACAGTGTGGCTCGTTTCCTGGAATCACGAGGAATGATAGAGGATGCTCTTGAAGTAGCTACTGACCCTGACTACAGGTTTGATCTAGCCATTCAGCTTGGAAGATTAGAGGTTGCTAAGGGTATAGCCACTGAAGTGCAGAGTGAGTCTAAATGGAAGCAATTGGGAGAATTAGCTATGTCTACTGGAAAGTTAGAAATGGCTGAAGAGTGTTTAAAATTCGCTATGGATTTGAGTGGATTATTACTGCTATATTCTTCTTTAGGGGATGCTGAAGGAATATCAAAACTTGCAACTCTTGCTAAAGAGCAAGGGAAAAATAATGTTGCATTCCTTTGCTTATTCACGTTGGGTAAACTTGAGGACTGCCTTCAGTTGTTGGTGGAAAGCAATCGGATTCCAGAGGCTGCTTTAATGGCTCGATCCTATCTCCCGAGCAAGGTCCCAGAGATAGTGGCAATTTGGAGAAAAGATCTCAGTAAGGTTAATTCAAAAGCCGCAGAATCATTGGCTGATCCTGAGGAGTATCCTAATTTGTTTGATGATTGGCAAGTTGCGCTTGCTGTTGAATCTAAAGCTGCAGAAACAAGAGGTGTTTACCCTCCTGCATCAGAGTACGTGAACCAGGCTGATAAATCATATATCACCCTTGTGGAAGCTTTCAGAAACATGCAGGTAGAAGAAGGGGATCAACCTCTTGAGAATGGGGACTCCGTCCACGAGTTGACTGAACATAACGGGGAAGAGCACTATCCAGATGAGCATGAGGAACAAAATGGAGAGGAAGGAAGCCAAGAGGAAGCAGTTGTAGTGGATGCCGATTCTACGGATGGTGCAATCCTCATCAACGGTAATGAGGCGGACGAAGAGTAA 2730 0.4231 MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFIARRQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWICTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAVGYLKGSRRVVIGYDEGTIMVKLGREEPVASMDNSGKIIWAKHNEIQTVNIRSIGADVEIADGERLPLAVKELGTCDLYPQSLRHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFAWSSDGEYAVRESTSKVKIFSKNFQEKKSIRPTFSAERIFGGTVLAMCSNDFICFYDWAECRLIRRIDVNVKNLYWADSGDLVTIASDTSFYILKYNRDVVASYLDSGSPADEQGVEDAFELLHETSERIRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHNSVARFLESRGMIEDALEVATDPDYRFDLAIQLGRLEVAKGIATEVQSESKWKQLGELAMSTGKLEMAEECLKFAMDLSGLLLLYSSLGDAEGISKLATLAKEQGKNNVAFLCLFTLGKLEDCLQLLVESNRIPEAALMARSYLPSKVPEIVAIWRKDLSKVNSKAAESLADPEEYPNLFDDWQVALAVESKAAETRGVYPPASEYVNQADKSYITLVEAFRNMQVEEGDQPLENGDSVHELTEHNGEEHYPDEHEEQNGEEGSQEEAVVVDADSTDGAILINGNEADEE* 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0131 909 MobiDBLite consensus disorder prediction 847 909 - -
Vra9g0131 909 PRINTS G protein beta WD-40 repeat signature 158 172 IPR020472 -
Vra9g0131 909 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Vra9g0131 909 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Vra9g0131 909 Pfam WD domain, G-beta repeat 134 171 IPR001680 GO:0005515
Vra9g0131 909 Pfam WD domain, G-beta repeat 91 127 IPR001680 GO:0005515
Vra9g0131 909 Pfam WD domain, G-beta repeat 220 256 IPR001680 GO:0005515
Vra9g0131 909 Pfam WD domain, G-beta repeat 177 215 IPR001680 GO:0005515
Vra9g0131 909 Gene3D - 590 798 - -
Vra9g0131 909 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 138 172 - -
Vra9g0131 909 ProSiteProfiles Trp-Asp (WD) repeats profile. 138 180 IPR001680 GO:0005515
Vra9g0131 909 PANTHER COATOMER SUBUNIT BETA' 1 872 - -
Vra9g0131 909 SUPERFAMILY WD40 repeat-like 3 297 IPR036322 GO:0005515
Vra9g0131 909 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 266 IPR001680 GO:0005515
Vra9g0131 909 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 256 - -
Vra9g0131 909 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 224 IPR001680 GO:0005515
Vra9g0131 909 SMART WD40_4 174 215 IPR001680 GO:0005515
Vra9g0131 909 SMART WD40_4 4 43 IPR001680 GO:0005515
Vra9g0131 909 SMART WD40_4 218 257 IPR001680 GO:0005515
Vra9g0131 909 SMART WD40_4 131 171 IPR001680 GO:0005515
Vra9g0131 909 SMART WD40_4 46 85 IPR001680 GO:0005515
Vra9g0131 909 SMART WD40_4 88 127 IPR001680 GO:0005515
Vra9g0131 909 SUPERFAMILY WD40 repeat-like 227 494 IPR036322 GO:0005515
Vra9g0131 909 CDD WD40 17 297 - -
Vra9g0131 909 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 218 - -
Vra9g0131 909 Pfam Coatomer WD associated region 319 763 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Vra9g0131 909 PANTHER COATOMER 1 872 - -
Vra9g0131 909 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Vra9g0131 909 MobiDBLite consensus disorder prediction 852 877 - -
Vra9g0131 909 PIRSF Beta'-COP 2 894 IPR016453 -
Vra9g0131 909 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
Vra9g0131 909 Gene3D - 11 300 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0131 Vra-Chr9 863344 873436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0131 72 309 Miscellaneous Gene Families AT5G08390 25.210 1.55e-18 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0131 K17302 - gmx:100797508 1769.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0131 9 863344 873436 Vra9g0131 9 863344 873436 ECH
Vra5g2425 5 31357889 31371443 Vra9g0131 9 863344 873436 PCT