Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2425 ATGCCTCTCAGACTCGAAATCAAGCGAAAGCTTGCGCAAAGATCAGAAAGAGTAAAATGTGTGGATCTACATCCAACAGAACCATGGATTCTGGCGAGTTTATACTCTGGAACTGTCTGTATCTGGAACTACCAATCTCAGACCATGGCCAAATCTTTTGAGGTTACCGAGTTACCAGTTAGATCTGCCAAGTTTATTGCACGAAGACAATGGGTTGTTGCCGGAGCCGATGATATGTTTATTCGTGTATATAATTATAACACGATGGATAAGGTCAAAGTATTTGAAGCACATACTGATTACATTAGGTGTGTGGCAGTTCATCCCACCCTTCCTTATGTGCTTTCATCATCTGATGATATGCTCATAAAACTCTGGGATTGGGAAAAAGGCTGGGTCTGTACCCAAATATTTGAAGGCCATTCTCATTATGTCATGCAAGTCACATTTAATCCCAAAGACACAAACACCTTTGCCAGTGCATCTCTTGATCGGACCATAAAGATTTGGAACCTTGGCTCACCTGACCCTAATTTTACATTGGATGCGCATCAGAAAGGAGTAAATTGTGTTGATTATTTTACAGGTGGTGACAAACCATATCTAATCACTGGTTCTGACGATCACACTGCCAAGGTATGGGATTATCAGACCAAAGGTTGTGTCCAGACCCTAGAAGGTCACACACACAATGTATCTGCTGTATGCTTCCATCCTGAACTTCCTATAATCATTACTGGTTCTGAAGATGGTACAGTACGCATATGGCACTCCACAACTTATAGGCTGGAAAACACATTGAACTATGGCCTTGAAAGAGTCTGGGCTATTGGATACTTGAAGGGTTCACGTCGAGTTGTGATTGGCTATGATGAAGGAACTATTATGGTCAAACTTGGTCGAGAGGTACCTGTGGCTAGCATGGACAACAGCGGGAAAATTATTTGGGCTAAGCATAATGAAATTCAGACTGTCAATATCAAAAGTGTAGGAGCAGATGTTGAGATTGCTGACGGAGAAAGGTTACCTTTAGCTGTTAAGGAGTTGGGCACATGTGATCTCTATCCCCAAAATTTAAAGCACAATCCAAATGGGAGGTTTGTTGTTGTATGTGGAGATGGTGAGTATATTATATACACTGCATTGGCTTGGAGAAATAGGTCATTTGGTTCAGCACTGGAATTTGTTTGGTCTTTTGAGGGAGAATATGCCGTCAGAGAGAGTACATCAAAGATTAAAATCTTTAGCAAAAATTTCCAGGAAAAGAGGAGTGTCCGACCAACATTTTCAGCTGAAAGAATATTTGGTGGCGCTTTATTGGCAATGTGCTCCAACGACTTCATCTGCTTTTATGATTGGGCTGAATGCAGGTTGATATATCGCATCGATGTCAATGTGAAAAACCTCTACTGGGCTGACAGTGGTGATCTAGTGACGATTGCTAGTGATACATCATTCTACATTCTGAAGTACAATCGTGATGTTGTTATGTCACATTTAGACAGTGGAAAACCGGTAGACGAGGAAGGTGTTGAAGATGCTTTTGAACTCTTACATGAAATGAATGAGCGTGTTAGGACAGGCATCTGGGTTGGGGATTGCTTTATCTACAACAATTCCTCTTGGAGACTTAACTACTGCGTTGGTGGTGAGGTTACTACAATGTTTCATTTGGATCGCCCTATGTACTTGTTGGGATATCTGGCAAATCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAATGTTATGGGATACACACTGCTTCTAAGCTTGATTGAGTACAAGACACTTGTGATGCGTGGTGATTTGGAAAGGGCCAATGAAATTCTACCATCAATCCCTAAAGAGCATCATAACAGTGTGGCTCACTTTCTGGAATCACGAGGGATGATAGAAGATGCTCTCGAAGTAGCCACTGACCCTGACTACAGATTTGATCTAGCGATACGTCTTGGAAAACTAGATGTTGCAAAGAGTATTGCAATAGAATTGCAGAGCGAGTCTAAATGGAAACAGTTAGGAGAATTAGCTATGTCTACTGGAAAGTTAGAAATGGCTGAGGAATGTTTGCAACATGCAATGGATTTGAGTGGTTTGTTACTCCTATATTCTTCTCTAGGAGATGCTGAAGGAATATCGAAACTTGCATCCCTTGCCAAGGAACAAGGGAAAAACAATGTTGCATTCCTATGCTTATTTATGTTGGGTAAATTAGAAGACTGCCTTCAACTATTGGTAGAAAGCAATCGAATTCCAGAGGCAGCTTTAATGGCTAGATCTTATCTTCCGAGCAAGGCATCAGAGATAGTGGCAATTTGGAGAAAAGATCTCAATAAGGTTAATCCCAAGGCTGCTGAATCATTGGCTGATCCTGAAGAATATCCAAATTTGTTTGAAGACTGGCAAATTGCACTTGGTGTTGAATCTAAAGCTGCAGAAACAAGGAATGTGTACCCTCCTGCAGACCAGTACCTCAACCATGCTGACAAATCACACATTACTCTTGTTGAAGCTTTCAGAAACATGCAGATTGAAGAAGAGGAACATCTAGAGAATGGGTTGACTGAACAAAATGGAGATGAGCACTACACAGAGGAACAAAATGGAGAGGAAGGAAGCCAAGAGGAGGCAGTTGTAGTGGATGCAGATTCTACAGATGGTGCAGTACTCGTTAATGGTAACGAGGCTGAAGAAGACTGGGTGCTTGCCCCACATCACTAG 2724 0.4148 MPLRLEIKRKLAQRSERVKCVDLHPTEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFIARRQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKGCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYLKGSRRVVIGYDEGTIMVKLGREVPVASMDNSGKIIWAKHNEIQTVNIKSVGADVEIADGERLPLAVKELGTCDLYPQNLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSFEGEYAVRESTSKIKIFSKNFQEKRSVRPTFSAERIFGGALLAMCSNDFICFYDWAECRLIYRIDVNVKNLYWADSGDLVTIASDTSFYILKYNRDVVMSHLDSGKPVDEEGVEDAFELLHEMNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLANQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHNSVAHFLESRGMIEDALEVATDPDYRFDLAIRLGKLDVAKSIAIELQSESKWKQLGELAMSTGKLEMAEECLQHAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKASEIVAIWRKDLNKVNPKAAESLADPEEYPNLFEDWQIALGVESKAAETRNVYPPADQYLNHADKSHITLVEAFRNMQIEEEEHLENGLTEQNGDEHYTEEQNGEEGSQEEAVVVDADSTDGAVLVNGNEAEEDWVLAPHH* 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2425 907 PRINTS G protein beta WD-40 repeat signature 158 172 IPR020472 -
Vra5g2425 907 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Vra5g2425 907 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Vra5g2425 907 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 138 172 - -
Vra5g2425 907 ProSiteProfiles Trp-Asp (WD) repeats profile. 138 180 IPR001680 GO:0005515
Vra5g2425 907 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 266 IPR001680 GO:0005515
Vra5g2425 907 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 256 - -
Vra5g2425 907 CDD WD40 17 297 - -
Vra5g2425 907 Pfam Coatomer WD associated region 319 763 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Vra5g2425 907 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 218 - -
Vra5g2425 907 MobiDBLite consensus disorder prediction 851 870 - -
Vra5g2425 907 PANTHER COATOMER 1 871 - -
Vra5g2425 907 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 224 IPR001680 GO:0005515
Vra5g2425 907 MobiDBLite consensus disorder prediction 851 878 - -
Vra5g2425 907 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Vra5g2425 907 SUPERFAMILY WD40 repeat-like 3 297 IPR036322 GO:0005515
Vra5g2425 907 PIRSF Beta'-COP 2 883 IPR016453 -
Vra5g2425 907 Pfam WD domain, G-beta repeat 18 43 IPR001680 GO:0005515
Vra5g2425 907 Pfam WD domain, G-beta repeat 133 171 IPR001680 GO:0005515
Vra5g2425 907 Pfam WD domain, G-beta repeat 221 256 IPR001680 GO:0005515
Vra5g2425 907 Pfam WD domain, G-beta repeat 177 215 IPR001680 GO:0005515
Vra5g2425 907 Pfam WD domain, G-beta repeat 91 127 IPR001680 GO:0005515
Vra5g2425 907 Gene3D - 590 798 - -
Vra5g2425 907 PANTHER COATOMER SUBUNIT BETA' 1 871 - -
Vra5g2425 907 SUPERFAMILY WD40 repeat-like 227 497 IPR036322 GO:0005515
Vra5g2425 907 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
Vra5g2425 907 Gene3D - 11 300 IPR015943 GO:0005515
Vra5g2425 907 SMART WD40_4 174 215 IPR001680 GO:0005515
Vra5g2425 907 SMART WD40_4 131 171 IPR001680 GO:0005515
Vra5g2425 907 SMART WD40_4 218 257 IPR001680 GO:0005515
Vra5g2425 907 SMART WD40_4 88 127 IPR001680 GO:0005515
Vra5g2425 907 SMART WD40_4 4 43 IPR001680 GO:0005515
Vra5g2425 907 SMART WD40_4 46 85 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2425 Vra-Chr5 31357889 31371443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2425 72 292 Miscellaneous Gene Families AT5G08390 25.792 2.56e-18 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2425 K17302 - gmx:100815780 1774.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2425 5 31357889 31371443 Vra5g2425 5 31357889 31371443 ECH
Vra5g2425 5 31357889 31371443 Vra9g0131 9 863344 873436 PCT