Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0123 ATGCCTTCACTCTCCGAAGCCTTTCGAGCTCATCCTGTCTACCTTCACCACAAGCACTCTGACTTCAACTCTCTGCAACACAAACTCCCAGATTCTTACGCATGGACACAACCAGATTCTCATGCTTACGCTGATACAAATTCTGATAACAACACTGTCCCCGTCATCGATTTGAAGGACCCTAATGCACCCAACCTCATAGGACATGCATGCAGAAGATGGGGCGTCTTCCAACTCGTCAACCATGGAGTCCCATTCACCCTCTTCACTGACATTCAGAGAGCTTGCCTTGCCTTGTTCTCTCTTCCTCTTCACCAGAAGCTCAAAGCTGCTCGCTCCCCCGACGCCGTCTCCGGCTACGGCCGCGCTCCCATCTCCTCCTTCTTCCCCAAACTCATGTGGTCTGAGTGCTTCACCATTCTCGATTCCCCTCACCACCTTTTTCTCCAACTCTGGCCCCAAGACCATGCTAAATACTCTGAGATTGTGAAGGACTATGAAGCAGCCATGAAAGAATTAGCGGCGAAGCTAATGCGCCTTGTGTTAGCTTCACTCGGTATTTCAAAGGAGGACGTTAAATGGGCCGGGCCCAGAGGTGAATTCAACGGGGCTTGCGCGGCCTTACATTGGAATTCTTACCCGAGTTGCCCGGATCCTGATCGGGCCATGGGTCTGGCGGCCCACACGGACTCCACACTGCTCACGATTCTGCACCAGAACAACGTGAGTGGGCTTCAGGTTCTGAAGGACGGTGAAGGGTGGGTGGCGGTTCCGCCGCTTTCCGGAGGGCTTGTGGTCAACATTGGCGATCTGCTCCACATTTTGTCGAACGGGTTGTACCCGAGTGTACTGCACCGGGTGCGGGTGAACCGGAGCTGGCAAAGGTTCTCGGTTGCTTATCTATATGGGCCCCCAAGAAACGTGGAGGTTAGTCCAAATGAAAAATTGGTAGGCCCAGGTAGGCCCTGTCTTTATCGATCGGTGAGTTGGAAGGAGTACCTTGGTATCAAAGCAAAGCATTTCAATAAGGCTCTCTCTGCTGTTAGAATTTCGTCCTCTATTAACGGTTTATTTGATGTAAAGGAGGTTCAGAACAACGACTTTCACGTGGGCTAG 1116 0.5188 MPSLSEAFRAHPVYLHHKHSDFNSLQHKLPDSYAWTQPDSHAYADTNSDNNTVPVIDLKDPNAPNLIGHACRRWGVFQLVNHGVPFTLFTDIQRACLALFSLPLHQKLKAARSPDAVSGYGRAPISSFFPKLMWSECFTILDSPHHLFLQLWPQDHAKYSEIVKDYEAAMKELAAKLMRLVLASLGISKEDVKWAGPRGEFNGACAALHWNSYPSCPDPDRAMGLAAHTDSTLLTILHQNNVSGLQVLKDGEGWVAVPPLSGGLVVNIGDLLHILSNGLYPSVLHRVRVNRSWQRFSVAYLYGPPRNVEVSPNEKLVGPGRPCLYRSVSWKEYLGIKAKHFNKALSAVRISSSINGLFDVKEVQNNDFHVG* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0123 371 Gene3D - 19 335 IPR027443 -
Vra9g0123 371 SUPERFAMILY Clavaminate synthase-like 25 341 - -
Vra9g0123 371 PRINTS Isopenicillin N synthase signature 67 84 - -
Vra9g0123 371 PRINTS Isopenicillin N synthase signature 264 290 - -
Vra9g0123 371 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 203 304 IPR005123 -
Vra9g0123 371 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 3 362 - -
Vra9g0123 371 Coils Coil 156 183 - -
Vra9g0123 371 Pfam non-haem dioxygenase in morphine synthesis N-terminal 53 143 IPR026992 -
Vra9g0123 371 PANTHER GIBBERELLIN 3-BETA-DIOXYGENASE 1-LIKE 3 362 - -
Vra9g0123 371 Pfam 2OG-Fe(II) oxygenase superfamily 209 304 IPR044861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0123 Vra-Chr9 773669 775039 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0123 67 348 Glycosyltransferase AT5G59530 28.859 6.77e-32 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0123 K04124 - gmx:100794180 628.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0123 9 773669 775039 Vra9g0123 9 773669 775039 ECH
Vra5g2411 5 31239158 31240804 Vra9g0123 9 773669 775039 PCT