Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2411 ATGCCTTCGCTCTCAGAAATCTATAGAGCCCACCCCGTTCACGTTCAACACAAGCATCCTGACTTAAACTCTCTACAAGAACTTCCTGAATCTTACACTTGGACGCAACACCAAGATCAAACTAATAATAATTCTACCCTCAACCACACTGTTCCTGTCATTGATCTCAACGACCCAAATGCTTCCAACCTAATAGGCCATGCATGCAGAACTTGGGGAGTCTATCAAGTGCTCAACCATGGCGTACCCATCACTCTTCTCCATGACATTCAACACCTTGGAGAAACCCTCTTCTCTCTTCCTTCTCACCACAAGCACAGAGCAGCTCGTTCCCCTGACGGTGTCGATGGTTATGGCCTCGCTCGCATCTCTTCCTTCTTCCCCAAACTCATGTGGTCCGAAGGCTTCACAATTGTCGGATCCCCTCTCGAGCGTTTTCGCCAACTATGGCCCCAAGATTACCACAGATACTGTGACATTGTCATGCAGTATGATGAAACGATGAAAAAGCTAGCGGAAAAGCTGATGTGGCTGATGTTGGAATCTCTGGGTATCATAGAGGAAGACCTAAAATGGGCCGGTGCAAAAGGTGAATTCAAAAAGACTTGCGCTGCCTTGCAACTGAATTCGTACCCGATATGTCCGGATCCGGATCGGGCAATGGGTCTGGCCGCGCACACGGACTCCACCCTTTTGACAATTCTTTACCAGAACAATATAAGCGGACTGCAAGTTGAGCGGAAAGGCAGCGGGTGGGTGACGGTGGCGCCAGTGAATGGCGGGCTTGTGGTAAACGTGGGAGACCTGATGCAGATATTGTCAAACGGGTTGTACCGGAGTGTGCTCCACCGGGTGTTGGTGAACCGGGTGAAGCAAAGGCTTTCGGTTGCTTATCTATGTGGCCCCCCAGCGAACGTGGAGATTTGTCCACACGAGAAGTTGGTAGGTCCAAACGAGCCTCGTCTTTATAAGTCAGTGACTTGGAATGAGTACCTTGGCACGAAAGCAAAGCATTTCAACAAGGCACTGTCTAAGGTTCGGGTATCTGGTAGTATGAGTGAGGAAGTTATCAGCTAG 1077 0.4949 MPSLSEIYRAHPVHVQHKHPDLNSLQELPESYTWTQHQDQTNNNSTLNHTVPVIDLNDPNASNLIGHACRTWGVYQVLNHGVPITLLHDIQHLGETLFSLPSHHKHRAARSPDGVDGYGLARISSFFPKLMWSEGFTIVGSPLERFRQLWPQDYHRYCDIVMQYDETMKKLAEKLMWLMLESLGIIEEDLKWAGAKGEFKKTCAALQLNSYPICPDPDRAMGLAAHTDSTLLTILYQNNISGLQVERKGSGWVTVAPVNGGLVVNVGDLMQILSNGLYRSVLHRVLVNRVKQRLSVAYLCGPPANVEICPHEKLVGPNEPRLYKSVTWNEYLGTKAKHFNKALSKVRVSGSMSEEVIS* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2411 358 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 3 343 - -
Vra5g2411 358 SUPERFAMILY Clavaminate synthase-like 16 339 - -
Vra5g2411 358 Gene3D - 18 342 IPR027443 -
Vra5g2411 358 Pfam 2OG-Fe(II) oxygenase superfamily 206 302 IPR044861 -
Vra5g2411 358 PANTHER GIBBERELLIN 3-BETA-DIOXYGENASE 1-LIKE 3 343 - -
Vra5g2411 358 Pfam non-haem dioxygenase in morphine synthesis N-terminal 51 151 IPR026992 -
Vra5g2411 358 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 201 302 IPR005123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2411 Vra-Chr5 31239158 31240804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2411 25 343 Glycosyltransferase AT5G59530 29.155 2.99e-37 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2411 K04124 - gmx:100798572 602.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2411 5 31239158 31240804 Vra5g2411 5 31239158 31240804 ECH
Vra5g2411 5 31239158 31240804 Vra9g0123 9 773669 775039 PCT