Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0120 ATGGAGGGGAGTGATATATACAGAGCAAGTAATAGTTTACGTGCGAGCAGTTCTACTGCATGGAGAAGGAGTATAATGGAGGGTTTTTCGAGGTCATCAAATCATGAAGAGGGAACAGATGAAGAAGCTCTGAAATGGGCTGCACTTGAGAAGCTACCTACTTACAACCGTTTGAAGAAAGGGTTGTTGACCACTTCACGTGGAGTCGCCAATGAGATTGATATAACTGAACTTGGATTTCGAGAAAGACAGAAACTTTTGGACAGGTTGATCAATGTTGCTGAAGAGGACAATGAGAGGTTTCTGTTGAAGCTTAAGGGTCGGATTGATAGAGTTGGGATTGATATTCCGACAATCGAAGTTCGATATGAGCACTTAAATGTTGAGGCAGAGACTTATGTGGGAAGTAGAGCTTTGCCTACTTTTGTGAACTTCGTTACTAACATTGTGGAGAGTGTCTTTACTTCTCTCCATATTCTCTCAGGCAAAAAGAAACATGTTACTATCCTTAAAGATGTCAGTGGAATAATCAAACCTCGCAGGATGACACTACTTTTGGGTCCTCCAAGTTCAGGAAAAACCACACTCCTTTTAGCCCTGTCGGGAAAACTTGATCCAAATCTTAAGGCATCGGGGAGAGTGACTTATAATGGGCATGGATTTGACGAGTTTGTTCCTCAGAGAACAGCTGCATATATTAGCCAGAATGATGTTCATATTGGAGAAATGACAGTGAGGGAAACCTTGGCATTCTCAGCAAGGTGCCAAGGAGTTGGAACACGTTACGACTTGCTATCTGAGTTGGCTAGAAGAGAAAAAGAAGCAAAGATCAAGCCAGACCCAGACATTGATGTCTACATGAAGGCAGCTGTAACTGGAGGTCAGGAGGCAAGTCTGGTAACAGATTATGTTCTGAAGATTCTGGGGTTGGATATATGTGCTGATACAATGATGGGGGATGAAATGTTGCGTGGTATATCTGGAGGACAAAGGAAGAGGGTTACTACAGGGGAGATGTTGGTTGGACCAGCAAATGCTCTATTTATGGATGAAATATCCACTGGTTTAGACAGTTCCACAACTTTTCAAATTGTGAAGTGTCTCAGGCAATATGTTCACATTCTTGATGGAACTGCAGTTATCTCTTTACTCCAGCCAGCACCGGAGACTTATGAACTTTTTGATGACATTATTCTTATATCTGATGGCCAAATTGTCTACCAAGGACCCCGTGAACATGTTCTTGAATTTTTTGAATCTGTTGGTTTCCAATGTCCAGAGAGGAAAGGTGTTGCTGACTTTCTACAAGAAGTAACTTCAAGAAAGGATCAAGAGCAGTATTGGATGCACAGAAATGAGCCATACAGGTTTGTAACTGTCACTCAATTTACTGAGGCATTTCAGTCATTTCATGTTGGGAGGAGAATTGGAGAAGAGCTTGCAACTCCATTTGACAAGTCCAAAAACCACCCAGCTGCATTAACCACGAAAAGGTATGGCGTGAACAAGAAGGAATTGATAAAGGCTAACATCTCAAGAGAGTTTTTGCTCATGAAAAGGAATTCATTTGTTTACATCTTCAAGCTGTTCCAGCTTACGACTTTGGCAATATTGACCATGACAATGTTTCTGCGAACTGAGATGCATCGGAATAACTTGGGTGATGGAGGTGTTTATACTGGTGCTCTATTTTTCGCAGTAGTAATTCTTATGTTTAATGGATTGGCTGAGATTTCAATGACCATTGTAAAGCTTCCTATTTTCTACAAGCAACGAGACCTTCTATTTTATCCTTCATGGGCATATGCTATTCCCTCATGGATCCTCAAGATCCCTATTACATTTTTAGAAGCTGCTGTTTGGGTATTTCTGACCTACTACGTAATTGGATTTGATCCAAATGTTTCGAGGTTTTTAAAGCAGTACCTTGTGCTACTACTGATAAACCAAATGTCTTCTGGTTTGTTCCGAGCTATTGCAGCACTTGGTAGGAACATGATTGTGGCTAACACATTTGGGTCCTTTGCACTTCTCATTCTTTTTGCATTGGGTGGCTTCATTCTATCAAGAAATGATATCAAGGACTGGTGGATTTGGGGTTACTGGATTTCACCTTTAATGTATGGACAGAATGCAATAGTGGTGAATGAATTCCTTGGAAACAGTTGGAACCACTTCACCCCAAATTCAAATAAGACTTTGGGAATTCAAATTCTGGAGTCACGTGGGTTCTTCACACATGCATATTGGTACTGGATAGGAATTGGGGCATTGATTGGATTTATCTTCCTCTTCAACATTATGTACACTTTGGCTCTCACTTACCTAAATCCATTTGACAAGCCGCAGACAACAATAACTGAAGAATCAGAAGGTGGTGTGGCTAATGGGAGAGCTCGAGAAGAAGGACTAACATGTTTAGAAAGTTCTGGGAGTTGTAGCCGCAGAAAGAATAGAGGAATGGTTCTTCCTTTTGAACCATATTCTATCACATTTGATCAAATAGTGTACTCTGTTGATATGCCACAAGAAATGAAGGATCAAGGTGTAAGGGAGGACAAATTGGTGCTTTTGAAAGGTGTGAGTGGTGCATTTTGTCCTGGTGTTCTCACAGCTTTGATGGGTGTAAGTGGTGCTGGAAAAACTACATTGATGGATGTTTTAGCTGGAAGGAAAACTGGTGGGTATATTGAGGGAAACATAAAAGTTTCTGGTTATCCCAAAAGGCAAGAAACATTTGCTCGTATTTCTGGTTATTGTGAGCAGAATGACATCCACTCTCCTCATGTTACCGTCTATGAGTCCTTGGTCTACTCTGCATGGCTTCGTTTGACAGCAGAAGTTGAATCCAATACTAGAAAGATGTTCATTGAGGAAGTCATGGAACTGGTGGAGTTGAACCCACTGAGGAACTCACTGGTTGGCTTGCCTGGTGTGAGTGGTCTCTCAACAGAACAACGTAAGAGGCTAACAATAGCAGTTGAATTAGTGGCTAATCCGTCCATAATTTTCATGGATGAGCCTACTTCTGGGTTAGATGCTAGAGCTGCTGCAATTGTTATGAGAACTGTCAGGAACACAGTCGACACTGGAAGAACAGTTGTTTGCACCATCCATCAGCCAAGCATTGACATATTTGAAGCATTTGATGAGTTATTCCTAATGAAGCGTGGAGGACAAGAAATATATGTTGGACCATTGGGTCGCCATTCTAGTCACTTGATCAAGTATTTTGAGAGCATTGAAGGGGTTAGTAAAATCAAAGATGGCTACAACCCAGCAACTTGGATGCTGGAAGTCACAACTCCAGCTCAGGAACTTACTTTAGGTGTTGATTTTCATGAAGTATACAGAAATTCTGAGCTGTATAGGAGAAACAAGCAACTTATAGCAGAACTAGGCAACCCCGGTCATGGATCAAAAGACATTCATTTTCCTACTCAATACGCTCAGTCACTTTTGGTTCAATGTCTAGCTTGCTTATGGAAACAACATTGGTCATATTGGCGTAATCCACCATATACAGCTGTTAGATTTCTATCAACTACTGTCATAGCTGTGATGTTTGGAACAATGTTTTGGGACCTTGGAGGCAAATACTCTAGCAGACAGGACCTATTCAATGCAATGGGTTCAATGTATAACGCTGTTCTCTTTGTTGGTATCCAAAATTCTGCCTCTGTACAACCTGTATTAGCCATTGGAAGAACTGTCTTTTACAGAGAAAGAGCTGCGGGAATGTATTCTGCCTTTCCATATGCACTTGCACAAGTTTTGATAGAGCTACCTTATATTTTTGTGCAAGCTACAACATATTCTGTCATAGTTTATTCCATGATGGGATTTGAATGGACTTTAGAGAAGTTCTTTTGGTACATGTTTTTCATGTACTTCACATTGTGCTACTTCACCTTCTATGGCATGATGACTGTGGCTGTCACACCAAATCACCATGTTGCTTCTGTTGTGGCTGCTGCATTTTACGGAATTTGGAACCTTTTCTCAGGATTTGTCATTCCACGACCTAGCATGCCTTTGTGGTGGAGGTGGTATTACTGGGCTTGCCCTGTGGCCTGGACCATATACGGCTTGCTTGCTTCACAGTTTGGAGACATAACCGATGTGATGAAGTTAGAAAATATTTCAGTGCAAGAGTTCTTGAGAAGTTATTTTGGTATCAGACATGATTTCATAGGAGTTTCTGCAATCATGGTTTCTGGTTTTGCAGGCTTGTTTGCTGTTATTTTTGCTGTCTCAATCAAGGCCTTCAACTTCCAAAAGCGATAG 4287 0.4117 MEGSDIYRASNSLRASSSTAWRRSIMEGFSRSSNHEEGTDEEALKWAALEKLPTYNRLKKGLLTTSRGVANEIDITELGFRERQKLLDRLINVAEEDNERFLLKLKGRIDRVGIDIPTIEVRYEHLNVEAETYVGSRALPTFVNFVTNIVESVFTSLHILSGKKKHVTILKDVSGIIKPRRMTLLLGPPSSGKTTLLLALSGKLDPNLKASGRVTYNGHGFDEFVPQRTAAYISQNDVHIGEMTVRETLAFSARCQGVGTRYDLLSELARREKEAKIKPDPDIDVYMKAAVTGGQEASLVTDYVLKILGLDICADTMMGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQIVKCLRQYVHILDGTAVISLLQPAPETYELFDDIILISDGQIVYQGPREHVLEFFESVGFQCPERKGVADFLQEVTSRKDQEQYWMHRNEPYRFVTVTQFTEAFQSFHVGRRIGEELATPFDKSKNHPAALTTKRYGVNKKELIKANISREFLLMKRNSFVYIFKLFQLTTLAILTMTMFLRTEMHRNNLGDGGVYTGALFFAVVILMFNGLAEISMTIVKLPIFYKQRDLLFYPSWAYAIPSWILKIPITFLEAAVWVFLTYYVIGFDPNVSRFLKQYLVLLLINQMSSGLFRAIAALGRNMIVANTFGSFALLILFALGGFILSRNDIKDWWIWGYWISPLMYGQNAIVVNEFLGNSWNHFTPNSNKTLGIQILESRGFFTHAYWYWIGIGALIGFIFLFNIMYTLALTYLNPFDKPQTTITEESEGGVANGRAREEGLTCLESSGSCSRRKNRGMVLPFEPYSITFDQIVYSVDMPQEMKDQGVREDKLVLLKGVSGAFCPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNIKVSGYPKRQETFARISGYCEQNDIHSPHVTVYESLVYSAWLRLTAEVESNTRKMFIEEVMELVELNPLRNSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSSHLIKYFESIEGVSKIKDGYNPATWMLEVTTPAQELTLGVDFHEVYRNSELYRRNKQLIAELGNPGHGSKDIHFPTQYAQSLLVQCLACLWKQHWSYWRNPPYTAVRFLSTTVIAVMFGTMFWDLGGKYSSRQDLFNAMGSMYNAVLFVGIQNSASVQPVLAIGRTVFYRERAAGMYSAFPYALAQVLIELPYIFVQATTYSVIVYSMMGFEWTLEKFFWYMFFMYFTLCYFTFYGMMTVAVTPNHHVASVVAAAFYGIWNLFSGFVIPRPSMPLWWRWYYWACPVAWTIYGLLASQFGDITDVMKLENISVQEFLRSYFGIRHDFIGVSAIMVSGFAGLFAVIFAVSIKAFNFQKR* 1429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0120 1428 Gene3D - 154 465 IPR027417 -
Vra9g0120 1428 SMART AAA_5 867 1059 IPR003593 -
Vra9g0120 1428 SMART AAA_5 179 411 IPR003593 -
Vra9g0120 1428 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 8 1428 - -
Vra9g0120 1428 Gene3D - 844 1074 IPR027417 -
Vra9g0120 1428 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 148 427 IPR003439 GO:0005524
Vra9g0120 1428 CDD ABCG_PDR_domain1 157 409 IPR034001 -
Vra9g0120 1428 Pfam ABC transporter 858 1010 IPR003439 GO:0005524
Vra9g0120 1428 Pfam ABC transporter 170 352 IPR003439 GO:0005524
Vra9g0120 1428 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 846 1066 IPR027417 -
Vra9g0120 1428 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 830 1082 IPR003439 GO:0005524
Vra9g0120 1428 Pfam Plant PDR ABC transporter associated 723 786 IPR013581 -
Vra9g0120 1428 Pfam ABC-transporter N-terminal 85 145 IPR029481 -
Vra9g0120 1428 Pfam ABC-2 type transporter 1156 1369 IPR013525 GO:0016020|GO:0140359
Vra9g0120 1428 Pfam ABC-2 type transporter 506 718 IPR013525 GO:0016020|GO:0140359
Vra9g0120 1428 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 427 IPR027417 -
Vra9g0120 1428 CDD ABCG_PDR_domain2 829 1065 IPR034003 -
Vra9g0120 1428 PANTHER ATP-BINDING CASSETTE TRANSPORTER 8 1428 - -
Vra9g0120 1428 Pfam ABC-2 type transporter 385 438 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0120 Vra-Chr9 749656 757672 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0120 K08711 - gmx:100783377 2616.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2410 5 31223077 31229329 Vra9g0120 9 749656 757672 PCT