Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2410 ATGGAGGGAGATATTTACAGAGCAAGTAACAGTTTACGTGCCAGAAGTTCAACGGTTTGGAGGAACAGTGGCGTGGAGGCATTTTCAAGGTCTTCACGTGAAGAGGATGACGAAGAAGCTCTCAAATGGGCTGCTCTTGAGAAGCTACCCACCTACAACCGTCTCAGGAAAGGGTTGTTGACAGCATCTCATGGAGTTGCAAACGAAATCGATGTTACTGATCTTGGTTTCCAACAGAAACAAAAGCTTCTTGAGAGGTTGGTTAAAGTGGCCGAAGAGGACAACGAGAGGTTCTTGTTGAAGCTCAGGGAGCGTATTGACAGAGTTGGGCTTGATCTTCCAACCATTGAAGTTCGATACGAGCACTTGAATATTGACGCAGAGGCTTTTGCGGGAAGTAGAGCCCTGCCTTCTTTCATCAACTCTGTTACCAATGTCCTAGAGGGATTTCTTAACTTGCTCCATATTGTCCCAAGCAAAAAGAAACACGTTACCATTCTTAAAGATGTCAGCGGAGTTATTAAACCTCGCAGGATGACACTGCTTTTGGGTCCTCCCAGTTCAGGAAAGACCACACTCCTCTTGGCCTTGTCTGGAAAGCTTGATGAAAGTCTTAAGGTATCAGGAAAAGTGACTTACAATGGGCATGAACTGAACGAGTTTGTGCCCCAGAGAACCGCTGCTTACATCAGCCAGCATGATGTTCACATTGGAGAAATGACTGTGAGGGAAACCTTGGCTTTCTCAGCAAGGTGCCAAGGTGTTGGATCACGTTATGACATGCTATCTGAGTTGTCTAGAAGAGAGAAAGCAGCAAATATCAAGCCTGACCCAGATCTTGATGTGTACATGAAGGCAACTGCAACTGCAGGCCAGGAGTCAAGCATAGTGACAGATTACACAATGAAGATTCTGGGGTTAGATATATGTGCTGATACCATGGTGGGGGATGAGATGTTGCGTGGGATCTCTGGAGGACAAAGGAAGCGTGTTACTACAGGAGAGATGTTGGTTGGACCTGCAAATGCTTTATTCATGGATGAAATCTCCACAGGGTTGGACAGCTCCACCACATTTCAGATTGTGAGCTCTCTCAGGCAGTACGTCCACATTCTAAATGGAACTGCTGTCATATCTTTGCTCCAGCCAGCACCCGAGACTTATGACCTTTTCGATGACATTATCTTAATCTCAGATGGCCAAGTTGTTTATCATGGCCCTCGTGAATATATTCTGGACTTCTTTGAATCCATGGGTTTCAGATGTCCCGAGAGGAAAGGTGCNGCTGACTTTCTTCAAGAAGTGACTTCCAAGAAAGATCAAGCACAGTACTGGGTGCGCAGAGATCAACCATACAGATTTGTGACGGTTACTCAGTTTGCTGAGGCTTTTCAATCATTCCATATCGGTAGGAAACTTGGACAGGAGCTTGCAGTTCCATTTGACAAGACTAAGAGCCACCCTGCTGCATTAACCACTAAGCGGTTTGGTATCAACAAGAAGGAGCTGTTAAAGGCTAACTTCTCAAGGGAGTATTTGCTTATGAAAAGGAATTCATTTGTTTACATCTTCAAGCTATGTCAGCTTTTCATCATGGCGTTGATTGCATTGACACTTTTTTTCCGAACGGAGATGCATCATGACGATATTGATGATGCGGGCGTTTATGCTGGTGCTATCTTTTTTACAATAATGACGGTTATGTTTAATGGAATGGCTGATATTTCGATGACCATTGCTAAGCTTCCTGTTTTCTACAAGCAACGGAATCTTCTATTTTATCCCTCTTGGGCATATGCCATTCCTTCGTGGATTCTCAAGATTCCCGTTACATTAGCGGAGGTTTCTGTTTGGGTATTTATGACCTACTACGTTATTGGATTTGATCCAAATGTTGGGAGGTTCTTCAAGCAGTTCCTCATTCTATTTTTTATCAGTCAGATGGCTTCTGGACTATTCAGAGCTATTGCAGCACTTGGTAGGAACATGATTGTTGCCAACACATTTGGATCCTTTGCAGTTCTCACGCTTCTTGCATTGGGTGGTTTCATTCTGTCAAAAAGGGATATCAAAAACTGGTGGATTTGGGGTTTCTGGATTTCACCTTTAATGTATGGGCAGAATGCTTTGATGATCAATGAATTTCTCGGAAACAATTGGCACAACGCTACCTACGATTTAGGAGTTGCATATTTGGACTCTCGTGCATTCTTCACAGATTCGTATTGGTATTGGATAGGCTTCGCGGGATTGGTTGGATTTGTGCTCGTTTTGAACGGGTTGTTTGCTTTTGCTCTCGAATTCCTTGGCCCATTTGATAAGCCACAAGCATCAGTAACTGAAGAAGAACCAGAAGCAAATAATGGAGGAACAGTAGCAGAAGTTGAATTACCACGAAGAGAAAGTTCAGGAAGAGATGGTTCTGTTGTGGAATCCAGCCATGGAAAGAAAAAGGGAATGGTTCTTCCTTTTGAACCACATTCTATCACCTTTGATGAAATTGTCTACTCTGTTGACATGCCACAGGAAATGAAGGATCAAGGTGTACAAGAGGACAGACTGGTGCTTCTGAAGGGTGTCAGTGGTGCATTCAGGCCTGGTGTTCTCACAGCTTTGATGGGTGTAAGTGGTGCTGGTAAGACTACGTTGATGGATGTTCTGGCTGGTAGGAAAACCGGCGGATATATTGATGGAAGCATCAAAATTTCTGGGTACCCTAAGAAGCAAGAAACATTTGCGCGTATCTCTGGATACTGTGAGCAAAATGATATCCATTCACCTCATGTTACTGTTTACGAATCCTTGGTCTACTCAGCCTGGCTACGTTTACCTTCAAGTGTTGATTCCAAAACCAGAAAGATGTTCATTGAGGAAGTCATGGAATTGGTGGAGCTGAACCCATTAAGGAACTCGCTGGTTGGATTGCCAGGTGTGAGTGGCCTCTCTACTGAACAGCGGAAGAGGCTGACTATTGCGGTTGAATTGGTGGCTAACCCATCCATAATTTTCATGGATGAGCCTACTTCTGGGCTAGATGCAAGAGCTGCTGCTATTGTCATGAGAACAGTCAGAAACACTGTGGACACCGGAAGAACTGTTGTGTGCACCATCCATCAGCCCAGCATTGACATATTTGAAGCATTTGATGAGCTGTTCCTAATGAAGCGTGGAGGACAAGAAATATACGTCGGGCCACTGGGACGTCATTCTAGTCATCTGATCAAGTATTTTGAGAGCATTGATGGAGTGAGCAAAATCAAAGATGGATATAACCCTGCTACATGGATGTTGGAAGTTACAACCACAGCTCAAGAGCTTAGTTTGGGTGTTGATTTCACTGACCTGTACAAGAACTCTGATCTATATAGGAGAAACAAACAGCTTATACAAGAGTTGAGTCAACCTGCTCCCGGTTCAAAGGATCTTCATTTCCCTAGTCGATACTCTCAGTCCTTCTTGGTTCAATGCCAAGCTTGCTTATGGAAACAACGCTGGTCATATTGGCGTAATCCACCATACACTTCTGTGAGGTTTTTCTTCACAACTTTCATAGCCCTGATGTTTGGAACGATGTTCTGGGACCTCGGAGGAAAACATTCGACCAGAGGAGACCTGATGAATGCTATAGGTTCAATGTACACTGCTGTTCTCTTCCTTGGAGTACAAAATTCTTCCTCAGTACAGCCTGTGGTAGCAGTTGAAAGGAGTGTCTTTTACAGAGAAAAAGCTGCCGGAATGTATTCTGCCTTACCCTATGCATTTTCACAGATTCTTGTGGAGCTACCCTATATCTTTGCTCAAGCAGTGACATACGGTCTAATAGTTTATGCCATGATCGGATTTGAGTGGACTGCTGAAAAATTCTTTTGGTACCTATTTTTCATGTACTTCACACTGTTGTACTTCACCTTCTATGGCATGATGGCTGTGGGAGTGACACCGAACCACCATGTTGCTTCAATCGTGGCTGCTGCATTTTATGCAGTTTGGAATCTCTTCTCAGGATTTGTTGTTGCAAGACCTAGCATTCCAATTTGGTGGAGATGGTACTATTGGGCATGCCCAGTGGCTTGGACCTTGTATGGATTGATTGGATCTCAGTTTGGAGATTTAACGGAATTCATGTCTGAAGAAGGCATGAACGTCAAAGATTTCATAGAACACAGTTATGGTATCGAACATGACTTCATTGGAGTTGCTGCTGTTGTGGTTGCTGGCATTGCTGTTCTCTTTGCATTTATTTTTGCTGTTGCAATCAAGACCTTTAACTTCCAAAAGAGATAG 4284 0.4374 MEGDIYRASNSLRARSSTVWRNSGVEAFSRSSREEDDEEALKWAALEKLPTYNRLRKGLLTASHGVANEIDVTDLGFQQKQKLLERLVKVAEEDNERFLLKLRERIDRVGLDLPTIEVRYEHLNIDAEAFAGSRALPSFINSVTNVLEGFLNLLHIVPSKKKHVTILKDVSGVIKPRRMTLLLGPPSSGKTTLLLALSGKLDESLKVSGKVTYNGHELNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLSELSRREKAANIKPDPDLDVYMKATATAGQESSIVTDYTMKILGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQIVSSLRQYVHILNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYILDFFESMGFRCPERKGAADFLQEVTSKKDQAQYWVRRDQPYRFVTVTQFAEAFQSFHIGRKLGQELAVPFDKTKSHPAALTTKRFGINKKELLKANFSREYLLMKRNSFVYIFKLCQLFIMALIALTLFFRTEMHHDDIDDAGVYAGAIFFTIMTVMFNGMADISMTIAKLPVFYKQRNLLFYPSWAYAIPSWILKIPVTLAEVSVWVFMTYYVIGFDPNVGRFFKQFLILFFISQMASGLFRAIAALGRNMIVANTFGSFAVLTLLALGGFILSKRDIKNWWIWGFWISPLMYGQNALMINEFLGNNWHNATYDLGVAYLDSRAFFTDSYWYWIGFAGLVGFVLVLNGLFAFALEFLGPFDKPQASVTEEEPEANNGGTVAEVELPRRESSGRDGSVVESSHGKKKGMVLPFEPHSITFDEIVYSVDMPQEMKDQGVQEDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGSIKISGYPKKQETFARISGYCEQNDIHSPHVTVYESLVYSAWLRLPSSVDSKTRKMFIEEVMELVELNPLRNSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSSHLIKYFESIDGVSKIKDGYNPATWMLEVTTTAQELSLGVDFTDLYKNSDLYRRNKQLIQELSQPAPGSKDLHFPSRYSQSFLVQCQACLWKQRWSYWRNPPYTSVRFFFTTFIALMFGTMFWDLGGKHSTRGDLMNAIGSMYTAVLFLGVQNSSSVQPVVAVERSVFYREKAAGMYSALPYAFSQILVELPYIFAQAVTYGLIVYAMIGFEWTAEKFFWYLFFMYFTLLYFTFYGMMAVGVTPNHHVASIVAAAFYAVWNLFSGFVVARPSIPIWWRWYYWACPVAWTLYGLIGSQFGDLTEFMSEEGMNVKDFIEHSYGIEHDFIGVAAVVVAGIAVLFAFIFAVAIKTFNFQKR* 1428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2410 1427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 424 IPR027417 -
Vra5g2410 1427 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 8 1427 - -
Vra5g2410 1427 PANTHER ATP-BINDING CASSETTE TRANSPORTER 8 1427 - -
Vra5g2410 1427 Pfam Plant PDR ABC transporter associated 722 779 IPR013581 -
Vra5g2410 1427 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 151 424 IPR003439 GO:0005524
Vra5g2410 1427 Pfam ABC-transporter N-terminal 80 141 IPR029481 -
Vra5g2410 1427 CDD ABCG_PDR_domain2 826 1064 IPR034003 -
Vra5g2410 1427 Pfam ABC-2 type transporter 382 435 IPR043926 GO:0140359
Vra5g2410 1427 CDD ABCG_PDR_domain1 149 406 IPR034001 -
Vra5g2410 1427 Gene3D - 151 459 IPR027417 -
Vra5g2410 1427 SMART AAA_5 176 408 IPR003593 -
Vra5g2410 1427 SMART AAA_5 866 1058 IPR003593 -
Vra5g2410 1427 Pfam ABC-2 type transporter 1155 1368 IPR013525 GO:0016020|GO:0140359
Vra5g2410 1427 Pfam ABC-2 type transporter 503 715 IPR013525 GO:0016020|GO:0140359
Vra5g2410 1427 Pfam ABC transporter 167 349 IPR003439 GO:0005524
Vra5g2410 1427 Pfam ABC transporter 857 1009 IPR003439 GO:0005524
Vra5g2410 1427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 848 1065 IPR027417 -
Vra5g2410 1427 Gene3D - 843 1073 IPR027417 -
Vra5g2410 1427 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 829 1081 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2410 Vra-Chr5 31223077 31229329 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2410 K08711 - gmx:100793825 2571.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2410 5 31223077 31229329 Vra9g0120 9 749656 757672 PCT