Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0117 ATGCCTGAGACAGCTACTACACCAACCAATTCCTCCTCTAACAGTCTATTCGAGCTTCTCACCGAAATGAAGAAGCAATCTTGTCCAGAATCAGTCACCTTACAAGCAAAATCTCCCTCCCAACACTGCTCCGAATGCTGGTTCGACGATGCATGCATCTTGGACATGGATTACTTCGTGAAGACCCTTTCTGGAATCAAGGCCAAAGGTGTTCGTGCAGACCTTATTGGCTCCATCATCACTCACTATGCCTCCAAATGGCTCCCTGATCTTTCTGCAGGTGATATGGTCGAAAAGGGTCTCACCCAAATCGAGGAATCACCGGAAAGCGTGACGGCTTCATGGATGAAGAAGAGGTTCTTCGTGGAAACCTTGGTGGGTGTTCTGCCTCCTGAGAAAGATGCAATTCCATGTAACTTTATGCTCAGGCTTCTGAGAACGGCCAACATGGTTGGAGTTGAGGGTAACTACAGGCAAGAGCTTGAGAAGCGTATTTCGTGGCAATTAGACCAGGCTTCGTTGAAGGAGTTGGTGATTCCATCTTTCAGCCACACTTGTGCCACTCTCTTGGATGTTGAACTTGTCATTAGGCTGGTTCAGAGGTTCGTGAGTTTGGACAGTGACGGAGCTAAGAGTGTTGCTTCTTTGGTTAAGGTAGCTAAGTTAGTCGATTCCTACCTTGCCGAGGCTGCTGTGGACTCCAATTTGAGCTTGAACGACTTCGTTACCCTTGCCGCCGCTCTTCCTAGCCATGCAAGAGCAACGGATGATGGCTTGTACCGTGCCATTGATACCTATCTTAAAGCACATCCAGCAGTGTCAAAGCAAGAAAGGAAGGGTCTTTGCAGGCTAATTGACAGCAGAAAACTGACCCCAGAGGCATCACTACATGCAGCACAGAACGAACGATTTCCAGTGAGAGCAGTGATTCAGGTGCTGCTTTCTGAGCAAAGCAAACTGTCACGGCACGTGGATTGGAGCGGTTCGTTGGTGAGTGGGACAAGAAGCCCCAGTACGATGGAGTTACCGACACGGTGTCTGTCGAAGCGTGAGGTGAACGCGCAGCAGCACGAGATAAGGAAGCTGAAGGACGACGTGTACAGGTTGCAGAGCCAGTGCAACGCCATGCAGGCTCAGATGGAGAGAATGGTGGAGAAGAAAAAGGGGTTCTTCAAGTGGAAGAAGTTTGCTTTTGGCAAAGCTGAACATGAAAAAATGGCACTTGAGCTTGAAGGGAATGAAATGTACACGCCTGCAGGTCTCAAAACCAGATTGGTCAATGTCAAAGGTAGCAAGAATAACAACAGTCACAAGTGGAGGATATCTATGTCGTGA 1335 0.4861 MPETATTPTNSSSNSLFELLTEMKKQSCPESVTLQAKSPSQHCSECWFDDACILDMDYFVKTLSGIKAKGVRADLIGSIITHYASKWLPDLSAGDMVEKGLTQIEESPESVTASWMKKRFFVETLVGVLPPEKDAIPCNFMLRLLRTANMVGVEGNYRQELEKRISWQLDQASLKELVIPSFSHTCATLLDVELVIRLVQRFVSLDSDGAKSVASLVKVAKLVDSYLAEAAVDSNLSLNDFVTLAAALPSHARATDDGLYRAIDTYLKAHPAVSKQERKGLCRLIDSRKLTPEASLHAAQNERFPVRAVIQVLLSEQSKLSRHVDWSGSLVSGTRSPSTMELPTRCLSKREVNAQQHEIRKLKDDVYRLQSQCNAMQAQMERMVEKKKGFFKWKKFAFGKAEHEKMALELEGNEMYTPAGLKTRLVNVKGSKNNNSHKWRISMS* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0117 444 Coils Coil 352 379 - -
Vra9g0117 444 PANTHER OS12G0117600 PROTEIN 5 443 IPR043454 -
Vra9g0117 444 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 5 443 - -
Vra9g0117 444 Pfam NPH3 family 46 295 IPR027356 -
Vra9g0117 444 ProSiteProfiles NPH3 domain profile. 45 319 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0117 Vra-Chr9 729149 731528 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0117 44 388 EF-hand Containing Proteins AT3G44820 33.158 1.07e-53 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0117 - - gmx:100793820 766.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0117 9 729149 731528 Vra9g0117 9 729149 731528 ECH
Vra5g2404 5 31166074 31169033 Vra9g0117 9 729149 731528 PCT