Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2404 ATGAAGAAGCAGTGTTGTGAAGAATCAGAGGCAACTGTTGGATCCTGGGAATGTTGGTTCGATGATGCATGCATCGTTGACATGGATTACTTTGTGAAGACCCTTTCAAGCATCAAACAGAAGGGTATTCGTGCCGACTTGATTGGTTCCATCATCACTCATTATGCTTCAATTTGGCTCCCTGATCTCTCTGCCTCTTCTGAGAATGGTGTCACCACTCAATTCCAATCCCCCGAAAGCGTCACGAATTCATGGATGAAGAAGAGATTCTTTGTGGAGACCTTGGTGAATGTTCTGCCTCCCGAGAAGGATTCTGTCCCATGCAACTTCCTCCTTCGCCTTCTCAGAACCGCCAACATGGTTCGGGTTGATGCCACTTACAGAGCTGAGATTGAGAACCGCATTTCCTCGCAGCTAGATCAAGCTTCTCTCAAAGAGCTCATGATACCCTCCTTCAGCCACACGTGTGGAACTCTCTTGGATGTTGAGCTTGTCCTCAGGTTGGTTAAGAGGTTTATGAGTATGGACCGTGATGGTGCTGCTTTGGTTAAGGTTGCCAAGCTGGTTGATTGCTACCTCGCTGAGGCTGCTGTGGATGCCAATCTGTCCTTGTCTGAGTTCCATGCACTTGCTGGAGTTCTTCCAAACCACGCAAGAGCCACGGATGATGGCTTGTACCGAGCCATTGACACTTACCTTAAAGCACATCCGGGTGTGTCAAAGCAAGAAAGGAAGGGCCTGTGCAGGCTGCTTGATAGCCGGAAACTGACACCAGAGGCCTCACTTCATGCAGCTCAAAATGAAAGGTTGCCTGTGAGAGCTGTGATTCAGGTGCTGTTCTCTGAACAAGCTAAACTCAACCGGCAAGTAGATTGGAGTGGCTCCTTCAGCTTGAGGAGCCCAAAGGGAGGCCTTGACCCACCTGGAAGGTGCCTTTCAAAGCGAGAAATGAATGCTCAGCAACTGGAGATAAGGAAGCTGAAGGAAGATGTTCACAGGCTGCAAAACCAGCTGAATGCCATGAAAGTGCAGATGGAGAGGTTGGCTGTGAAGAAGAAGGGCTTATTCAAATGGAAGAGGCTTGGAATGCCTACATTTGGTAGAAATGTGGGAGGGGTGGAGAGAATTGAAGAAGAGGAGGAGGAAGCTGAAAGAGAAAGTAGGTTTGGAAGGCAAACGCCAATGGAAATGAAAACCAGTTTGGTGAAAAGTAGGACTCCCCACAAGTGGAGGAAATCTATGTCCTAA 1248 0.484 MKKQCCEESEATVGSWECWFDDACIVDMDYFVKTLSSIKQKGIRADLIGSIITHYASIWLPDLSASSENGVTTQFQSPESVTNSWMKKRFFVETLVNVLPPEKDSVPCNFLLRLLRTANMVRVDATYRAEIENRISSQLDQASLKELMIPSFSHTCGTLLDVELVLRLVKRFMSMDRDGAALVKVAKLVDCYLAEAAVDANLSLSEFHALAGVLPNHARATDDGLYRAIDTYLKAHPGVSKQERKGLCRLLDSRKLTPEASLHAAQNERLPVRAVIQVLFSEQAKLNRQVDWSGSFSLRSPKGGLDPPGRCLSKREMNAQQLEIRKLKEDVHRLQNQLNAMKVQMERLAVKKKGLFKWKRLGMPTFGRNVGGVERIEEEEEEAERESRFGRQTPMEMKTSLVKSRTPHKWRKSMS* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2404 415 PANTHER OS12G0117600 PROTEIN 15 415 IPR043454 -
Vra5g2404 415 Coils Coil 317 351 - -
Vra5g2404 415 Pfam NPH3 family 18 261 IPR027356 -
Vra5g2404 415 Coils Coil 373 393 - -
Vra5g2404 415 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 15 415 - -
Vra5g2404 415 ProSiteProfiles NPH3 domain profile. 17 285 IPR027356 -
Vra5g2404 415 MobiDBLite consensus disorder prediction 374 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2404 Vra-Chr5 31166074 31169033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2404 19 347 EF-hand Containing Proteins AT3G44820 30.319 4.23e-47 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2404 - - gmx:100777820 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2404 5 31166074 31169033 Vra5g2404 5 31166074 31169033 ECH
Vra5g2404 5 31166074 31169033 Vra9g0117 9 729149 731528 PCT