Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0102 ATGTCAACCCATTCATATGTTATCCTAAAAGAAACATTCATATATTGTCTAATAAGTCCAAAATTCGAACAAGCCCTGAACACTCGCTCTGGGGTGGTGAAGATTTGCACATCAATCGGCATAAAGCGAGCAAAAAAGGGCATGGAGGCCTTGCACTTGCACCGCGTGCTCCCCATGCCTGTTCCTCAAAACTCCATCTTTTGGTGTTCAACTGCTACCCAATTAACCACAATTCCCATTGTAAGGCCACCATTGCTTCGGAAATCAGCACCCACATCCCAAACTTGCACTGCCAGAGCAGGGTGGTTTTTGGGTCTTGGAGCAGATACCATGAAGACAAATTTACCTGACACTGTCAAAGCCGGTGACCCTGTTCTGCATGAGCCTGCTCGGGAAGTTGATCCCAATGAGATAAAGTCGGAGAAAGTACAGAATATCATTGATGACATGATTCGGGTCATGAGGAAGGCTCCTGGAGTTGGTCTAGCTGCTCCCCAGATTGGAATTCCTTTCAGGATAATTGTTTTGGAAGATACCAAAGAGTATATTAGTTATGTCCCGAAGGAAGAGGCTAGAGTCCAAGATAGAAGACCTTTTGATCTTTTGGTCATCCTGAATCCCAAGCTTGAGAAGAAGAGCAAGAAGACTGCTCTATTTTTTGAAGGGTGTTTGAGTGTTGATGGGTTTAGAGCACTGGTAGAGCGATCCCTTGAGGTTGAGGTCACAGGTTTGGATCGCTATGGTGCACCAATCAAAATAAACGCTTCTGGGTGGCAGGCCCGGATTTTACAACATGAGTGTGATCATTTGGATGGAACTCTGTATGTTGATAAGATGGTACCTAGAACTTTCAGAACTGTGGACAACCTTGACCTGCCTCTTGCTCAGGGGTGTCCCAAACTTGGCCCTCGCTAA 915 0.4568 MSTHSYVILKETFIYCLISPKFEQALNTRSGVVKICTSIGIKRAKKGMEALHLHRVLPMPVPQNSIFWCSTATQLTTIPIVRPPLLRKSAPTSQTCTARAGWFLGLGADTMKTNLPDTVKAGDPVLHEPAREVDPNEIKSEKVQNIIDDMIRVMRKAPGVGLAAPQIGIPFRIIVLEDTKEYISYVPKEEARVQDRRPFDLLVILNPKLEKKSKKTALFFEGCLSVDGFRALVERSLEVEVTGLDRYGAPIKINASGWQARILQHECDHLDGTLYVDKMVPRTFRTVDNLDLPLAQGCPKLGPR* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0102 304 PANTHER PEPTIDE DEFORMYLASE 89 304 IPR023635 GO:0042586
Vra9g0102 304 Gene3D Peptide deformylase 114 303 IPR036821 -
Vra9g0102 304 PANTHER PEPTIDE DEFORMYLASE 89 304 - -
Vra9g0102 304 Pfam Polypeptide deformylase 119 282 IPR023635 GO:0042586
Vra9g0102 304 TIGRFAM pept_deformyl: peptide deformylase 119 281 IPR023635 GO:0042586
Vra9g0102 304 Hamap Peptide deformylase [def]. 114 290 IPR023635 GO:0042586
Vra9g0102 304 PRINTS Peptide deformylase signature 148 177 IPR023635 GO:0042586
Vra9g0102 304 PRINTS Peptide deformylase signature 221 232 IPR023635 GO:0042586
Vra9g0102 304 PRINTS Peptide deformylase signature 233 251 IPR023635 GO:0042586
Vra9g0102 304 PRINTS Peptide deformylase signature 252 281 IPR023635 GO:0042586
Vra9g0102 304 SUPERFAMILY Peptide deformylase 115 286 IPR036821 -
Vra9g0102 304 CDD Pep_deformylase 119 275 IPR023635 GO:0042586
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0102 Vra-Chr9 645272 648184 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0102 K01462 - gmx:100784292 425.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0102 9 645272 648184 Vra9g0102 9 645272 648184 ECH
Vra5g2387 5 31021114 31023554 Vra9g0102 9 645272 648184 PCT