Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2387 ATGGAAGCGGTGCAGCTGCTGGCATTGCGGCTGCGCGCAGTTCCGGTGGCGGCATACCTCTTTCGAAACGCCGTCGTAATGTGCGGCGGATTTCGCAGCAGCAACAGCAACAGCACCACCAGCACGAGCATTAGCGGAATGGCAGGGAAGAGGATGAGCTCTGGTTCGGGATGGTTGATGGGCGGAGCATTGAAGTTACCGAAAATTGTGAAAGCCGGAGAGCCGGTTCTGCACGAGCGAGCCAAAGAAGTTGAGCCGTCGGAGATGAAATCGGAGAGAGTGCAGAAGATCATCGACGACATGATCCGCGTCATGCGAAAGGCACCTGGAGTTGGCCTCGCTGCTCCACAGATTGGAATTCCCCTAAGGATAATTGTTTTGGAAGATAAAGTAGAGTATATGGGTTATGACGATGAGGAAGCCCTCAAAGAACAAGATAGAAGACCTTTTCATCTTTTGGTGATATTGAATCCTAAGCTCAAGAAGAAGACCAACAGGACTGCACTCTTTTTTGAAGGATGTTTGAGTGTTGCTGGGTACGCTGTGGTAGAGCGATACCTTGATGTTGAGGTTGAAGGTTTTGATCGTTACGGGGAACCCGTAAAAATAAATGCTACTGGTTGGCAGGCTCGGATTTTACAGCATGAGTGTGATCACTTGGATGGAACACTGTATCTTGATAAGATGGTACCTAGAACATTCAGAGCTCCAGAAAACAGTTCTAAGCCTCTTGCCCGTGGGTGCCCAAAACTTGGTCCTCGCTGA 765 0.4967 MEAVQLLALRLRAVPVAAYLFRNAVVMCGGFRSSNSNSTTSTSISGMAGKRMSSGSGWLMGGALKLPKIVKAGEPVLHERAKEVEPSEMKSERVQKIIDDMIRVMRKAPGVGLAAPQIGIPLRIIVLEDKVEYMGYDDEEALKEQDRRPFHLLVILNPKLKKKTNRTALFFEGCLSVAGYAVVERYLDVEVEGFDRYGEPVKINATGWQARILQHECDHLDGTLYLDKMVPRTFRAPENSSKPLARGCPKLGPR* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2387 254 Hamap Peptide deformylase [def]. 65 244 IPR023635 GO:0042586
Vra5g2387 254 Pfam Polypeptide deformylase 68 232 IPR023635 GO:0042586
Vra5g2387 254 SUPERFAMILY Peptide deformylase 66 237 IPR036821 -
Vra5g2387 254 CDD Pep_deformylase 69 225 IPR023635 GO:0042586
Vra5g2387 254 PANTHER PEPTIDE DEFORMYLASE 36 254 - -
Vra5g2387 254 PRINTS Peptide deformylase signature 99 128 IPR023635 GO:0042586
Vra5g2387 254 PRINTS Peptide deformylase signature 172 183 IPR023635 GO:0042586
Vra5g2387 254 PRINTS Peptide deformylase signature 202 231 IPR023635 GO:0042586
Vra5g2387 254 Gene3D Peptide deformylase 64 253 IPR036821 -
Vra5g2387 254 PANTHER PEPTIDE DEFORMYLASE 36 254 IPR023635 GO:0042586
Vra5g2387 254 TIGRFAM pept_deformyl: peptide deformylase 68 232 IPR023635 GO:0042586
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2387 Vra-Chr5 31021114 31023554 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2387 K01462 - gmx:100306710 340.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2387 5 31021114 31023554 Vra9g0102 9 645272 648184 PCT