Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0003 ATGTCTTCTCTTAGTAGGGAATTGGTGTTCTTGATCTTGCAGTTTCTCGATGAGGAAAAGTTCAAAGAGACTGTGCACAAGCTTGAGCAGGAATCAGGGTTTTTCTTTAACATGAAATATTTTGAGGATGAAGTGCACAATGGGAATTGGGACGAGGTGGAGAAATACCTCTCTGGTTTCACCAAGGTGGATGATAATAGGTATTCTATGAAGATATTTTTTGAGATAAGGAAGCAGAAGTATCTGGAGGCTTTAGATAAGCATGACCGGTCTAAGGCAGTAGAAATATTAGTGAAGGATTTGAAAGTGTTTGCAACTTTTAATGAAGAATTGTTCAAGGAAATCACACAGCTTCTGACATTGGAAAACTTTAGGGAGAATGAACAACTGTCTAAGTATGGCGATACAAAGTCTGCACGAGCAATAATGTTGGTTGAGCTCAAAAAGCTCATTGAAGCAAATCCTTTATTCCGTGACAAATTGCAATTTCCCAACCTTAAAAACTCAAGGTTACGGACTCTAATCAATCAAAGCCTAAATTGGCAGCATCAACTTTGCAAGAACCCACGGCCAAATCCTGATATAAAAACACTTTTCGTGGATCATTCATGTGGACAACCAAATGGTGCACGAGCTCCTTCACCTGCTAATAATCCACTACTAGGCTCATTACCAAAGGCTGGAGGATTTCCTCCACTTGGTGCACATGGGCCTTTTCAACCTACTCCAGCACCAGTGCCAACACCCCTGGCTGGTTGGATGTCTAATCCAACCACTGTAGCACATGCTGCAGTTTCTGGAGGTGGAGCTATAGGTCTTGGTGCTCCGTCGATCCCTGCTGCTTTGAAGCATCCTAGGACTCCCCCAACTAATCCTTCGGTTGACTATCCATCTGGAGACTCAGACCATGTTGCCAAGAGAACAAGGCCAATTGGAATTTCGGATGAGGTGAATCTACCTGTCAATGTGTTATCAGCAACATTCCCAGGTCATGGTCAACACAGTCAAGCTTTTAACGCACCTGATGACATACCCAAGGCTGTTGTGCGGACTCTTAATCAGGGATCAGCTCCTATGAGCATGGACTTTCATCCAGTTCAGCAATCTTTACTTCTTGTTGGTACAAATGTGGGGGACATTGCTTTGTGGGAGGTGGGTTCTAGGGAGCGATTGGTTTCAAGAAATTTCAAAGTTTGGGATCTTAGTGCATGTTCAATGCCATTTCAGGCTGCTCTTGTTAAAGATCCGGGTGTTTCTGTCAACCGTGTGATTTGGAGTCCTGATGGTGCTTTATTTGGAGTTGCTTACTCAAGGCACATTGTTCAGATATACGCTTACCAAGGTGGGGATGAAATACGACAGCATTTGGAGATTGATGCTCATGTTGGTGGAGTAAACGATCTAGCATTCTCCCACCCAAATAAGCAACTATGCGTGATAACTTGTGGTGATGATAAGACCATTAGGGTATGGGATGCTGCTTCGGGTGCAAAGCAGTATACATTTGAAGGTCATGAGGCTCCTGTTTATTCTGTCTGCCCACATTACAAAGAAAACATTCAGTTCATCTTTTCAACAGCATTAGATGGAAAAATAAAAGCATGGCTGTATGACAATTTAGGATCCCGTGTTGATTATGAAGCTCCTGGTCGTTGGTGCACTACCATGGCTTATAGTGCTGATGGTACAAGGCTCTTTTCATGTGGGACTAGCAAAGATGGAGAGTCCTCGATTGTTGAGTGGAATGAGAGTGAAGGAGCTGTGAAAAGGACTTATCAAGGATTTCGTAAGCGATCTTTGGGTGTTGTGCAATTTGATACTACCAAAAATCGATTTTTGGCCGCTGGTGATGATTTCTCCATCAAATTCTGGGATATGGATAATGTTCAGCTTTTGACAACTGTTGATGCTGATGGGGGTCTCCCTGCAAGCCCACGTATTCGTTTCAACAAGGATGGAATACTTTTAGCTGTCTCCGCAAATGACAATGGAATCAAAATTTTGGCCAATGGGGATGGCATACGTTTGTTGCGCACATTAGAGAATTCTTTGTATGATGCTTCAAGAGCATCAGAAGCCTTGACAAAGCCTACAATTAATCCAATTTCTGCTGCTGCTGCCGCAGCTGCTGCAACTAGTGCTGCACTGGCAGAGAGGGCTTCATCTGTAGTAGCTATTACTGGAATGAATGGGGATACCAGAAACATGGGTGATGTTAAACCCAGAATAAGTGAAGAATCAAATGACAAGTCAAAGGTATGGAAGCTCACTGAAATCAACGAACAATCTCAATGTAGATCCTTGAAGCTACCAGAGAACGTGAGAGTTACTAAGATATCAAGGTTGATATATACAAATTCGGGTAATGCTATTCTTGCATTAGCATCTAATGCTATTCACCTGCTGTGGAAATGGCAGCGAAATGAGCGCAATTCAACTGGCAAGGCCACTGCTACCTTGCAACCTCAGTTGTGGCAACCTTCTAGTGGCATCCTGATGACCAATGACGTTGCTGATAGCAATCCTGAGGATTCTGTACCCTGCTTTGCATTGTCCAAAAATGATTCATACGTAATGTCTGCATCAGGAGGGAAGATATCTCTGTTCAATATGATGACCTTTAAGACTATGACAACGTTCATGCCTCCACCACCTGCGGCAACCTTTCTTGCTTTCCATCCTCAGGATAACAATATTATTGCTATAGGCATGGATGACTCCTCTATTCAAATATACAATGTCCGTGTTGACGAGGTCAAAAGTAAACTCAAAGGCCATACTAAAAGAATTACTGGTCTTGCTTTCTCTCATGTATTGAATGTATTAGTTTCATCTGGAGCAGATGCTCAGATTTGTGTTTGGAACACGGATGGATGGGAAAAGCAGAAGTCTAGATTCTTGCAGCTTCCTCCTGGGAGGACACCACCGGCACAGTCAGATACCCGTGTACAGTTTCATCAAGATCAAATACAGTTCCTGGTTGTACATGAAACTCAGCTTGCCATTTATGAAGCAACAAAACTAGAAGGTCTAAAGCAGTGGTGCCCGCGAGATTCATCTGCTCCAATATCGCATGCAACCTTCTCGTGCGATAGCCAGCTTATATATGCCAGCTTTTTAGACGCAACAATCTGTGTATTTAGTGCATCAAATCTCAGATTACGTTGTCGTATCAATCCTTCTGCATATCTTCCTGCAAGTGTCAGTTCCAACGTACAACCACTTGTAATTGCGGCTCATCCACAAGAGCCAAATCAGTTTGCTGTAGGACTGTCGGACGGTGGAGTTCATGTTTTTGAACCCCTCGAGTCCGAAGGCAAGTGGGGTGTGCCTCCTCCGATTGAGAATGGGTCAGCAAGCAATGTTGCAGCTACTTCTGTTGGACCTTCTTCAGATCAAGCTCAAAGATGA 3411 0.4339 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQPTPAPVPTPLAGWMSNPTTVAHAAVSGGGAIGLGAPSIPAALKHPRTPPTNPSVDYPSGDSDHVAKRTRPIGISDEVNLPVNVLSATFPGHGQHSQAFNAPDDIPKAVVRTLNQGSAPMSMDFHPVQQSLLLVGTNVGDIALWEVGSRERLVSRNFKVWDLSACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYAYQGGDEIRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIRVWDAASGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGILLAVSANDNGIKILANGDGIRLLRTLENSLYDASRASEALTKPTINPISAAAAAAAATSAALAERASSVVAITGMNGDTRNMGDVKPRISEESNDKSKVWKLTEINEQSQCRSLKLPENVRVTKISRLIYTNSGNAILALASNAIHLLWKWQRNERNSTGKATATLQPQLWQPSSGILMTNDVADSNPEDSVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKSRFLQLPPGRTPPAQSDTRVQFHQDQIQFLVVHETQLAIYEATKLEGLKQWCPRDSSAPISHATFSCDSQLIYASFLDATICVFSASNLRLRCRINPSAYLPASVSSNVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPIENGSASNVAATSVGPSSDQAQR* 1137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0003 1136 MobiDBLite consensus disorder prediction 1107 1136 - -
Vra9g0003 1136 SMART Lish 4 36 IPR006594 GO:0005515
Vra9g0003 1136 SUPERFAMILY WD40 repeat-like 354 667 IPR036322 GO:0005515
Vra9g0003 1136 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Vra9g0003 1136 ProSiteProfiles Trp-Asp (WD) repeats profile. 458 501 IPR001680 GO:0005515
Vra9g0003 1136 Pfam WD domain, G-beta repeat 922 955 IPR001680 GO:0005515
Vra9g0003 1136 Pfam WD domain, G-beta repeat 458 492 IPR001680 GO:0005515
Vra9g0003 1136 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Vra9g0003 1136 ProSiteProfiles Trp-Asp (WD) repeats profile. 923 964 IPR001680 GO:0005515
Vra9g0003 1136 ProSitePatterns Trp-Asp (WD) repeats signature. 479 493 IPR019775 -
Vra9g0003 1136 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1136 IPR027728 GO:0006355
Vra9g0003 1136 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 1136 - -
Vra9g0003 1136 ProSiteProfiles Trp-Asp (WD) repeats profile. 603 634 IPR001680 GO:0005515
Vra9g0003 1136 SMART WD40_4 873 913 IPR001680 GO:0005515
Vra9g0003 1136 SMART WD40_4 539 582 IPR001680 GO:0005515
Vra9g0003 1136 SMART WD40_4 585 625 IPR001680 GO:0005515
Vra9g0003 1136 SMART WD40_4 1009 1048 IPR001680 GO:0005515
Vra9g0003 1136 SMART WD40_4 1061 1100 IPR001680 GO:0005515
Vra9g0003 1136 SMART WD40_4 345 384 IPR001680 GO:0005515
Vra9g0003 1136 SMART WD40_4 451 492 IPR001680 GO:0005515
Vra9g0003 1136 SMART WD40_4 495 536 IPR001680 GO:0005515
Vra9g0003 1136 SMART WD40_4 406 445 IPR001680 GO:0005515
Vra9g0003 1136 SMART WD40_4 916 955 IPR001680 GO:0005515
Vra9g0003 1136 SMART WD40_4 833 870 IPR001680 GO:0005515
Vra9g0003 1136 Gene3D - 318 547 IPR015943 GO:0005515
Vra9g0003 1136 Gene3D - 776 1127 IPR015943 GO:0005515
Vra9g0003 1136 MobiDBLite consensus disorder prediction 285 304 - -
Vra9g0003 1136 MobiDBLite consensus disorder prediction 1118 1136 - -
Vra9g0003 1136 SMART ctlh 34 92 IPR006595 -
Vra9g0003 1136 Gene3D - 548 691 IPR015943 GO:0005515
Vra9g0003 1136 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 923 955 - -
Vra9g0003 1136 SUPERFAMILY WD40 repeat-like 841 1101 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0003 Vra-Chr9 17979 25757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0003 439 653 Miscellaneous Gene Families AT5G08390 23.636 6.50e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0003 - - gmx:100795759 2197.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0003 9 17979 25757 Vra5g1960 5 25298598 25309620 ECH
Vra9g0003 9 17979 25757 Vra9g0003 9 17979 25757 ECH
Vra9g0003 9 17979 25757 Vra5g1960 5 25298598 25309620 PCT